Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABXV02_RS05900 Genome accession   NZ_CP159912
Coordinates   1126708..1127352 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain PY79     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1121708..1132352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS05870 - 1122095..1122463 (-) 369 WP_003243784.1 hypothetical protein -
  ABXV02_RS05875 - 1122577..1122702 (-) 126 WP_003228793.1 hypothetical protein -
  ABXV02_RS05880 degQ 1122924..1123064 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ABXV02_RS05885 comQ 1123249..1124148 (+) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  ABXV02_RS05890 comX 1124136..1124303 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  ABXV02_RS05895 comP 1124318..1126627 (+) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  ABXV02_RS05900 comA 1126708..1127352 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ABXV02_RS05905 yuxO 1127371..1127751 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  ABXV02_RS05910 mnhG 1127790..1128164 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ABXV02_RS05915 mrpF 1128148..1128432 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ABXV02_RS05920 mrpE 1128432..1128908 (-) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  ABXV02_RS05925 mrpD 1128914..1130395 (-) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  ABXV02_RS05930 mrpC 1130388..1130729 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ABXV02_RS05935 mrpB 1130729..1131160 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1016726 ABXV02_RS05900 WP_003220716.1 1126708..1127352(+) (comA) [Bacillus subtilis strain PY79]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1016726 ABXV02_RS05900 WP_003220716.1 1126708..1127352(+) (comA) [Bacillus subtilis strain PY79]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment