Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ABXV02_RS00675 Genome accession   NZ_CP159912
Coordinates   115493..115783 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain PY79     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 110493..120783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXV02_RS00660 yabE 110689..112002 (-) 1314 WP_003226754.1 ubiquitin-like domain-containing protein -
  ABXV02_RS00665 dayD 112158..112925 (-) 768 WP_003226756.1 TatD family hydrolase -
  ABXV02_RS00670 metG 113004..114998 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  ABXV02_RS00675 abrB 115493..115783 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  ABXV02_RS00680 rsmI 115832..116710 (-) 879 WP_003243457.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ABXV02_RS00685 yazA 116685..116984 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  ABXV02_RS00690 trmNF 116971..117714 (-) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ABXV02_RS00695 yabA 117773..118132 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  ABXV02_RS00700 ricT 118147..118974 (-) 828 WP_003243571.1 competence/sporulation regulator complex protein RicT -
  ABXV02_RS00705 holB 118977..119966 (-) 990 WP_003244417.1 DNA polymerase III subunit delta' -
  ABXV02_RS00710 yaaR 119978..120418 (-) 441 WP_009966249.1 YaaR family protein -
  ABXV02_RS00715 darA 120431..120760 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=1016705 ABXV02_RS00675 WP_003226760.1 115493..115783(+) (abrB) [Bacillus subtilis strain PY79]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1016705 ABXV02_RS00675 WP_003226760.1 115493..115783(+) (abrB) [Bacillus subtilis strain PY79]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment