Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DQM44_RS00265 Genome accession   NZ_LS483318
Coordinates   35308..36072 (+) Length   254 a.a.
NCBI ID   WP_022554077.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 30308..41072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM44_RS00255 (NCTC5370_00052) - 32765..33967 (+) 1203 WP_022554076.1 CHAP domain-containing protein -
  DQM44_RS00260 (NCTC5370_00053) - 34121..35083 (+) 963 WP_003049033.1 ribose-phosphate diphosphokinase -
  DQM44_RS00265 (NCTC5370_00054) recO 35308..36072 (+) 765 WP_022554077.1 DNA repair protein RecO Machinery gene
  DQM44_RS00270 (NCTC5370_00055) plsX 36179..37186 (+) 1008 WP_015016512.1 phosphate acyltransferase PlsX -
  DQM44_RS00275 (NCTC5370_00056) - 37179..37421 (+) 243 WP_003056449.1 phosphopantetheine-binding protein -
  DQM44_RS00280 (NCTC5370_00057) purC 37585..38295 (+) 711 WP_022554078.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30014.22 Da        Isoelectric Point: 5.9433

>NTDB_id=1016679 DQM44_RS00265 WP_022554077.1 35308..36072(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INQNLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=1016679 DQM44_RS00265 WP_022554077.1 35308..36072(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC5370]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGACAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATCAGAACCTTTTTCGACTTTCCTATGCAAGTTATGTAGTGGCTTTGGCAGATGCCGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTCTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTGTGCCCTGAACATTATCATAAAGATGACTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACCATTCAGTTTGATGAATTGAGAACCATTTCTTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAATTGTATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.415

96.85

0.614