Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   DQL75_RS06815 Genome accession   NZ_LS483317
Coordinates   1327214..1328365 (+) Length   383 a.a.
NCBI ID   WP_111762234.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC5663     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1322214..1333365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL75_RS06790 (NCTC5663_01288) yfmH 1323042..1324328 (+) 1287 WP_000664781.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  DQL75_RS06795 (NCTC5663_01289) ymfI 1324328..1325032 (+) 705 WP_111762233.1 elongation factor P 5-aminopentanone reductase -
  DQL75_RS06800 (NCTC5663_01290) - 1325137..1325964 (+) 828 WP_000214890.1 YmfK family protein -
  DQL75_RS06805 (NCTC5663_01291) - 1325983..1326375 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  DQL75_RS06810 (NCTC5663_01292) pgsA 1326409..1326987 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DQL75_RS06815 (NCTC5663_01293) cinA 1327214..1328365 (+) 1152 WP_111762234.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  DQL75_RS06820 (NCTC5663_01294) recA 1328530..1329573 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  DQL75_RS06825 (NCTC5663_01295) rny 1329927..1331486 (+) 1560 WP_001050913.1 ribonuclease Y -
  DQL75_RS06830 - 1331740..1333155 (-) 1416 Protein_1296 transposase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43218.65 Da        Isoelectric Point: 6.2913

>NTDB_id=1016629 DQL75_RS06815 WP_111762234.1 1327214..1328365(+) (cinA) [Staphylococcus aureus strain NCTC5663]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAKIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSYFINHNRIIHSELLRFAGIGESKVETVLIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDILIEQAVIKKINEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDIKKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNLEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=1016629 DQL75_RS06815 WP_111762234.1 1327214..1328365(+) (cinA) [Staphylococcus aureus strain NCTC5663]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAATGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGTTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCAAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGATCAACTGTATTAGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTA
AAAAATGAATTGTTGTCATATTTTATAAACCATAATCGAATTATACACTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAGTATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCAGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTAATTCAACCTGTTAAGCAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACATATTAATTGAGCAAGCTGTAATAAAGAAAATTAATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAAGAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTATTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
AGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCAAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTTATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431