Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABVT50_RS04885 Genome accession   NZ_CP159888
Coordinates   1139784..1140257 (-) Length   157 a.a.
NCBI ID   WP_367428384.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer04     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1134784..1145257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVT50_RS04865 (ABVT50_16015) lpdA 1135136..1136890 (+) 1755 WP_369608980.1 dihydrolipoyl dehydrogenase -
  ABVT50_RS04870 (ABVT50_05810) - 1137149..1138267 (+) 1119 WP_370387844.1 AI-2E family transporter -
  ABVT50_RS04875 (ABVT50_05800) rpsT 1138397..1138663 (+) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABVT50_RS04880 (ABVT50_05795) - 1138696..1139649 (+) 954 WP_369608982.1 bile acid:sodium symporter family protein -
  ABVT50_RS04885 (ABVT50_05790) recX 1139784..1140257 (-) 474 WP_367428384.1 recombination regulator RecX Regulator
  ABVT50_RS04890 (ABVT50_05785) - 1140254..1140961 (-) 708 WP_100139940.1 phosphoglycolate phosphatase -
  ABVT50_RS04895 (ABVT50_05775) - 1141114..1142184 (-) 1071 WP_367430785.1 aldose epimerase family protein -
  ABVT50_RS04900 (ABVT50_05770) - 1142171..1143484 (-) 1314 WP_369608983.1 replication-associated recombination protein A -
  ABVT50_RS04905 (ABVT50_05765) - 1143649..1143996 (+) 348 WP_267390078.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 18484.11 Da        Isoelectric Point: 9.2160

>NTDB_id=1016626 ABVT50_RS04885 WP_367428384.1 1139784..1140257(-) (recX) [Snodgrassella alvi strain Acer04]
MKPKISLRGRAIAILARQEISRAELTRKLRPHVEENDDIESLLDELAERHWQSDARYAETYINSKSRIHGNLRLQQSLKQ
KGVKAELIADYLPDKAEQISNAVAVLQKKYRRPPSDLKEKHKYMHFLAYRGFSMDIINTAMHRAWEESILPEEEFWE

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1016626 ABVT50_RS04885 WP_367428384.1 1139784..1140257(-) (recX) [Snodgrassella alvi strain Acer04]
ATGAAACCAAAAATCAGCTTACGCGGCCGTGCCATTGCTATATTGGCACGGCAAGAAATCAGCCGTGCTGAGCTGACACG
TAAATTACGCCCGCATGTAGAAGAAAACGATGATATTGAATCTTTGCTAGATGAACTAGCCGAGCGGCACTGGCAATCTG
ATGCTCGCTATGCGGAAACCTACATCAACAGTAAAAGCCGTATACACGGCAATCTGCGATTACAGCAAAGCCTTAAACAA
AAAGGAGTTAAAGCGGAGCTGATAGCCGATTATCTGCCAGACAAAGCGGAACAAATCAGTAATGCAGTCGCTGTTTTACA
AAAAAAATATCGCCGGCCTCCATCTGATTTAAAAGAAAAGCACAAATATATGCATTTTCTAGCCTATCGTGGATTTAGCA
TGGATATTATCAATACAGCTATGCATCGTGCTTGGGAAGAGAGTATTCTTCCAGAGGAAGAGTTTTGGGAATAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(31-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

53.378

94.268

0.503

Multiple sequence alignment