Detailed information NTG1016615

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABVT50_RS01500
• Genome accession: NZ_CP159888
• Coordinates: 343325..344599 (-)
• Length: 424 a.a.
• NCBI ID: WP_369608688.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer04
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 338325..349599

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVT50_RS01490 (ABVT50_15250)	-	339990..341669 (+)	1680	WP_369608686.1	McrB family protein	-
ABVT50_RS01495 (ABVT50_15255)	-	341675..342805 (+)	1131	WP_369608687.1	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	-
ABVT50_RS01500 (ABVT50_10900)	pilA	343325..344599 (-)	1275	WP_369608688.1	signal recognition particle-docking protein FtsY	Machinery gene
ABVT50_RS01505 (ABVT50_15260)	-	345006..345554 (-)	549	WP_100141057.1	5'-3'-deoxyribonucleotidase	-
ABVT50_RS01510 (ABVT50_10875)	ruvA	345596..346174 (-)	579	WP_369608689.1	Holliday junction branch migration protein RuvA	-
ABVT50_RS01515 (ABVT50_15265)	-	346253..346966 (-)	714	WP_100141055.1	septal ring lytic transglycosylase RlpA family protein	-
ABVT50_RS01520 (ABVT50_10860)	-	347327..348037 (-)	711	WP_369608690.1	ComF family protein	-
ABVT50_RS01525 (ABVT50_10855)	bioH	348036..348788 (+)	753	WP_367427752.1	pimeloyl-ACP methyl ester esterase BioH	-
ABVT50_RS01530 (ABVT50_10850)	-	348785..349594 (+)	810	WP_367420726.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 45407.42 Da
• Isoelectric Point: 4.5714

>NTDB_id=1016615 ABVT50_RS01500 WP_369608688.1 343325..344599(-) (pilA) [Snodgrassella alvi strain Acer04]
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHTQPEPAASHQSVEEHTSNAAVSESTATETTEDIIVPAAVDEP
AAIATSTESEVVQAPASENTIVIPVETTETPSETDKPARLGWAARLKQGLSKSRNQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPIDKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GEGIDDLRPFDAKAFVDALIEDEE

Nucleotide

• Length: 1275 bp

>NTDB_id=1016615 ABVT50_RS01500 WP_369608688.1 343325..344599(-) (pilA) [Snodgrassella alvi strain Acer04]
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCGCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATACCCAGCCTGAACCGGCTGCTTCCCACCAGAGCGTAGAAGAGCACA
CATCGAATGCAGCCGTCTCCGAATCAACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCAGCCGTAGATGAACCG
GCCGCCATTGCCACCAGCACGGAATCAGAAGTTGTTCAGGCTCCGGCCAGCGAAAACACCATAGTGATTCCAGTAGAAAC
CACAGAAACCCCTAGCGAAACAGACAAACCAGCTCGGCTGGGCTGGGCAGCACGGCTCAAACAGGGTCTAAGCAAATCGC
GCAACCAGATGGCCAAATCGCTTGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTACGAAGAGCTGGAAACA
GTATTGCTCACCAGTGATATGGGTATCGAAGCCACCGAAAAACTACTGGCACAGGTACGTCAGCGCGTTACCCTGAAAGG
ATTGAAAAACGGAAACGAACTGCGAAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCTTTGT
CCATACCTATTGATAAAAAACCTTTTGTTATCATGATGGCTGGTGTAAACGGCGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTGCTGGCCGCTGGCGACACCTTCCGTGCAGCTGCCCGTGAGCA
ATTACAGCAATGGGGTGAGCGCAATAACGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCCGCTGTCTGCTTCGATG
CCCTTGAAGCAGCCAAAGCACGTGGTATTGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAGTCATGCTGGTACTCGA
TGCCAACGTCGGCCAGAATGCCATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCCTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCGGTACGTTTCATCGGTGTA
GGCGAAGGCATAGACGATTTACGCCCGTTTGACGCCAAAGCATTTGTAGATGCATTGATTGAGGATGAAGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (137-202)

• SRP54-type protein, GTPase domain (SRP54) (221-420)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	65.094	100	0.651