Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   DQL75_RS01485 Genome accession   NZ_LS483317
Coordinates   333460..334167 (-) Length   235 a.a.
NCBI ID   WP_000094093.1    Uniprot ID   A0A1D4DWM6
Organism   Staphylococcus aureus strain NCTC5663     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 328460..339167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL75_RS01460 (NCTC5663_00276) lip2 328566..330500 (+) 1935 Protein_278 YSIRK domain-containing triacylglycerol lipase Lip2/Geh -
  DQL75_RS01465 (NCTC5663_00277) - 330594..331799 (-) 1206 WP_106096706.1 tyrosine-type recombinase/integrase -
  DQL75_RS01470 (NCTC5663_00278) - 331904..332521 (+) 618 WP_106096705.1 ATPase -
  DQL75_RS14475 (NCTC5663_00279) - 332528..332680 (-) 153 WP_158697090.1 hypothetical protein -
  DQL75_RS01475 (NCTC5663_00280) - 332737..332919 (-) 183 WP_000705246.1 hypothetical protein -
  DQL75_RS01480 - 333119..333306 (-) 188 Protein_283 hypothetical protein -
  DQL75_RS14480 (NCTC5663_00282) - 333293..333448 (-) 156 WP_172452292.1 hypothetical protein -
  DQL75_RS01485 (NCTC5663_00283) irvR 333460..334167 (-) 708 WP_000094093.1 helix-turn-helix domain-containing protein Regulator
  DQL75_RS01490 (NCTC5663_00284) - 334338..334577 (+) 240 WP_000548578.1 helix-turn-helix transcriptional regulator -
  DQL75_RS01495 (NCTC5663_00285) - 334590..335033 (+) 444 WP_000435360.1 hypothetical protein -
  DQL75_RS01500 (NCTC5663_00286) - 335048..335188 (+) 141 WP_000939495.1 hypothetical protein -
  DQL75_RS01505 (NCTC5663_00287) - 335181..335390 (-) 210 WP_000772137.1 hypothetical protein -
  DQL75_RS01510 (NCTC5663_00288) - 335447..335638 (+) 192 WP_000389905.1 hypothetical protein -
  DQL75_RS01515 (NCTC5663_00289) - 335640..335867 (-) 228 WP_000801108.1 hypothetical protein -
  DQL75_RS01520 (NCTC5663_00290) - 335923..336249 (+) 327 WP_001025595.1 hypothetical protein -
  DQL75_RS14580 - 336246..336345 (+) 100 Protein_293 hypothetical protein -
  DQL75_RS01530 (NCTC5663_00292) - 336494..336757 (+) 264 WP_001124198.1 helix-turn-helix domain-containing protein -
  DQL75_RS01535 (NCTC5663_00293) - 336769..336930 (+) 162 WP_001285949.1 DUF1270 domain-containing protein -
  DQL75_RS01540 (NCTC5663_00294) - 337023..337352 (+) 330 WP_000829611.1 hypothetical protein -
  DQL75_RS01545 (NCTC5663_00295) - 337333..337593 (+) 261 WP_145959545.1 DUF1108 family protein -
  DQL75_RS01550 (NCTC5663_00296) - 337603..337824 (+) 222 WP_001077279.1 DUF2483 family protein -
  DQL75_RS01555 (NCTC5663_00297) - 337817..338596 (+) 780 WP_111761856.1 ATP-binding protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26769.35 Da        Isoelectric Point: 5.4082

>NTDB_id=1016593 DQL75_RS01485 WP_000094093.1 333460..334167(-) (irvR) [Staphylococcus aureus strain NCTC5663]
MSSFSSNLERLMNKRDMSDSELAELVDVNRTTVTRWRKGIRSPKLDKLPEIANVFGVKPLDLIHDMDDSKIIEEIHNVSS
QLTPPRQSNVLKYATNQLEEQNNDSDNLVDFNSYIQEKSEVDIYGCASAGIGERLYNEPISKEFVRGYVPAHDIALKVNG
DSMEPLFKNGQIIFIEKSHTIKDGQIGVFIINGDAYVKKVYVEDNRLTLVSLNKKYKDLHFYDNESVRLVGKVIL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1016593 DQL75_RS01485 WP_000094093.1 333460..334167(-) (irvR) [Staphylococcus aureus strain NCTC5663]
ATGAGTTCATTTTCTTCGAATTTAGAACGTCTGATGAACAAAAGAGATATGAGTGATAGTGAATTAGCAGAATTAGTAGA
TGTTAATAGAACAACAGTCACAAGATGGAGAAAGGGAATTAGAAGTCCAAAACTAGATAAATTACCTGAAATAGCTAATG
TTTTTGGAGTTAAACCCTTAGATTTAATACATGATATGGATGATTCGAAAATTATTGAAGAAATTCATAACGTATCATCT
CAACTCACGCCTCCAAGACAAAGCAATGTACTAAAATATGCGACTAATCAATTAGAAGAGCAAAATAATGACAGTGATAA
TCTGGTAGATTTCAATTCTTACATTCAAGAAAAATCCGAAGTGGATATATATGGTTGTGCGTCTGCTGGTATTGGTGAAA
GATTATATAACGAGCCTATTTCAAAAGAATTCGTAAGAGGTTATGTCCCCGCACATGATATAGCTTTAAAAGTAAATGGA
GACTCAATGGAGCCGTTATTTAAAAATGGACAAATTATATTCATTGAAAAATCTCACACTATCAAAGATGGACAAATAGG
CGTCTTTATTATAAATGGAGATGCTTACGTAAAGAAGGTTTATGTAGAAGATAACAGATTAACGTTGGTTTCTTTAAATA
AAAAGTATAAAGATTTACATTTTTATGATAATGAAAGTGTGAGGTTAGTTGGAAAAGTTATTTTATAG

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(123-234)

Helix-turn-helix (HTH_3)

(8-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D4DWM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

30.769

100

0.374