Detailed information NTG1016536

Bioinformatically predicted

Overview

• Name: pilV
• Type: Machinery gene
• Locus tag: ABXU55_RS23620
• Genome accession: NZ_CP159885
• Coordinates: 5066344..5066868 (+)
• Length: 174 a.a.
• NCBI ID: WP_003116261.1
• Uniprot ID: Q7WZP2
• Organism: Pseudomonas aeruginosa strain T117
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	5065223..5073333	5066344..5066868	within	0

Gene organization within MGE regions

Location: 5065223..5073333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXU55_RS23610	-	5065223..5065723 (+)	501	WP_003116259.1	GspH/FimT family pseudopilin	-
ABXU55_RS23615	-	5065846..5066334 (+)	489	WP_003141552.1	GspH/FimT family pseudopilin	-
ABXU55_RS23620	pilV	5066344..5066868 (+)	525	WP_003116261.1	type IV pilus modification protein PilV	Machinery gene
ABXU55_RS23625	-	5066877..5067692 (+)	816	WP_003116262.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
ABXU55_RS23630	-	5067689..5068294 (+)	606	WP_003116263.1	pilus assembly protein	-
ABXU55_RS23635	-	5068308..5071784 (+)	3477	WP_003116264.1	PilC/PilY family type IV pilus protein	-
ABXU55_RS23640	-	5071787..5072113 (+)	327	WP_003116266.1	PilY2 family type 4a fimbrial biogenesis protein	-
ABXU55_RS23645	-	5072110..5072196 (+)	87	WP_354689478.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 174 a.a.
• Molecular weight: 18763.51 Da
• Isoelectric Point: 4.9113

>NTDB_id=1016536 ABXU55_RS23620 WP_003116261.1 5066344..5066868(+) (pilV) [Pseudomonas aeruginosa strain T117]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide

• Length: 525 bp

>NTDB_id=1016536 ABXU55_RS23620 WP_003116261.1 5066344..5066868(+) (pilV) [Pseudomonas aeruginosa strain T117]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-26)

3D structure

• AlphaFold DB: Q7WZP2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilV	Pseudomonas aeruginosa PAK	59.429	100	0.598