Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CJH_RS05925 Genome accession   NZ_CP006851
Coordinates   1133656..1134150 (+) Length   164 a.a.
NCBI ID   WP_002855991.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni F38011     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128656..1139150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJH_RS05910 (CJH_05970) - 1130042..1131220 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  CJH_RS05915 (CJH_05975) gpsA 1131230..1132126 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CJH_RS05920 (CJH_05980) gatB 1132123..1133541 (-) 1419 WP_041160159.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  CJH_RS05925 (CJH_05985) luxS 1133656..1134150 (+) 495 WP_002855991.1 S-ribosylhomocysteine lyase Regulator
  CJH_RS05930 (CJH_05990) - 1134461..1135453 (+) 993 WP_041160160.1 isopenicillin N synthase family oxygenase -
  CJH_RS05935 (CJH_05995) - 1135464..1136234 (+) 771 WP_002882216.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  CJH_RS05940 (CJH_06000) metE 1136246..1138510 (+) 2265 WP_041160161.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18258.18 Da        Isoelectric Point: 5.9947

>NTDB_id=101652 CJH_RS05925 WP_002855991.1 1133656..1134150(+) (luxS) [Campylobacter jejuni subsp. jejuni F38011]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPNKDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=101652 CJH_RS05925 WP_002855991.1 1133656..1134150(+) (luxS) [Campylobacter jejuni subsp. jejuni F38011]
ATGCCATTATTAGATAGTTTTAAAGTTGATCATACCAAAATGCCAGCGCCCGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGTGTATTTGATTTGCGTTTTTGCGTACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAGATTCGGTTGAAATCATTGATATTTCACCT
ATGGGCTGTCGTACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment