Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CJH_RS03170 Genome accession   NZ_CP006851
Coordinates   602917..603300 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni subsp. jejuni F38011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 597917..608300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJH_RS03150 (CJH_03195) - 597996..599930 (-) 1935 WP_002918407.1 ribonuclease R family protein -
  CJH_RS03155 (CJH_03200) ilvC 600049..601071 (+) 1023 WP_002873648.1 ketol-acid reductoisomerase -
  CJH_RS03160 (CJH_03205) - 601075..602157 (+) 1083 WP_002873647.1 divergent polysaccharide deacetylase family protein -
  CJH_RS03165 (CJH_03210) dprA 602147..602920 (+) 774 WP_002873646.1 DNA-processing protein DprA Machinery gene
  CJH_RS03170 (CJH_03215) dprB 602917..603300 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  CJH_RS03175 (CJH_03220) - 603329..604168 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CJH_RS03180 (CJH_03225) msrA 604344..604841 (-) 498 WP_002874288.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CJH_RS03185 (CJH_03230) ppa 604882..605400 (-) 519 WP_002852138.1 inorganic diphosphatase -
  CJH_RS03190 (CJH_03235) adk 605410..605988 (-) 579 WP_002868428.1 adenylate kinase -
  CJH_RS03195 (CJH_03240) aspS 605985..607736 (-) 1752 WP_041160066.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=101638 CJH_RS03170 WP_002852281.1 602917..603300(+) (dprB) [Campylobacter jejuni subsp. jejuni F38011]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=101638 CJH_RS03170 WP_002852281.1 602917..603300(+) (dprB) [Campylobacter jejuni subsp. jejuni F38011]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449