Detailed information NTG0101635

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: CJH_RS02545
• Genome accession: NZ_CP006851
• Coordinates: 480698..483271 (-)
• Length: 857 a.a.
• NCBI ID: WP_002868055.1
• Uniprot ID: -
• Organism: Campylobacter jejuni subsp. jejuni F38011
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 475698..488271

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJH_RS02535 (CJH_02575)	maf	478191..478742 (+)	552	WP_002868053.1	septum formation inhibitor Maf	-
CJH_RS02540 (CJH_02580)	pbpA	478739..480670 (+)	1932	WP_002868054.1	penicillin-binding protein 1A	-
CJH_RS02545 (CJH_02585)	clpC	480698..483271 (-)	2574	WP_002868055.1	AAA family ATPase	Regulator
CJH_RS02550 (CJH_02590)	-	483383..483673 (-)	291	WP_002855280.1	metal-sensing transcriptional repressor	-
CJH_RS02555 (CJH_02595)	-	483791..485125 (+)	1335	WP_002873408.1	S41 family peptidase	-
CJH_RS02560 (CJH_02600)	purC	485127..485837 (+)	711	WP_002854922.1	phosphoribosylaminoimidazolesuccinocarboxamide synthase	-
CJH_RS02565 (CJH_02605)	purS	485846..486091 (+)	246	WP_002857003.1	phosphoribosylformylglycinamidine synthase subunit PurS	-
CJH_RS02570 (CJH_02610)	purQ	486093..486765 (+)	673	Protein_492	phosphoribosylformylglycinamidine synthase I	-
CJH_RS02575 (CJH_02615)	-	486737..487933 (+)	1197	WP_002873406.1	SH3 domain-containing protein	-

Sequence

Protein

• Length: 857 a.a.
• Molecular weight: 95501.63 Da
• Isoelectric Point: 5.2764

>NTDB_id=101635 CJH_RS02545 WP_002868055.1 480698..483271(-) (clpC) [Campylobacter jejuni subsp. jejuni F38011]
MANIQDFLTDNMLSNLESAASLAIHSKNTEVVPLHLLWALSVDNASILNQILNKLNISKEALELEIKSRISKLATSSNVS
RENIRFSNELINSLENAKGLMSANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKIDSKTSDETLD
SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVEALAQRIIKKDVPKSLQNKKVIA
LDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILFIDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYR
KYFEKDAALQRRFQPVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYITDRFLPDKAIDLIDEAAAE
LKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELANLKEKQNALNSQFENEKSVFDGISAKKKEID
LLKNEASLAKARGEFQKAAELEYGKIPSLEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQ
KFLEVEKHLKESVIGQDKALSALSRAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKFLFDDEKAMIRFDMSEF
MEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEVEKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILT
SNIASSAIMNLSGKEQEDAVKNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENAAL
LIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKKA

Nucleotide

• Length: 2574 bp

>NTDB_id=101635 CJH_RS02545 WP_002868055.1 480698..483271(-) (clpC) [Campylobacter jejuni subsp. jejuni F38011]
ATGGCAAATATACAAGATTTTTTAACTGATAATATGCTTTCAAACCTTGAAAGTGCAGCATCTTTAGCTATACATTCTAA
AAATACTGAAGTCGTACCTTTGCACCTTTTATGGGCTTTAAGCGTAGATAATGCAAGTATTTTAAATCAAATTTTAAATA
AATTAAATATTTCTAAAGAAGCCTTAGAACTTGAAATTAAAAGCAGAATTTCAAAACTTGCAACGAGTTCAAATGTAAGC
CGTGAAAATATACGCTTTTCCAATGAACTTATAAATTCATTAGAAAATGCCAAAGGATTAATGAGTGCTAATGGAGATAG
TTATTTAAGTGTGGATACTTGGCTTATAAGTGAAAGTCAAAAAAGTCCTATCAAAGAAATTTTGGCGCAATTTTTAGATT
TAAGAGAATTTCAAAAAGAGCTTGAAAGTCTAAGAGCGGGACGCAAAATCGATAGCAAAACAAGCGATGAAACCTTAGAT
AGTTTAAATAAATTTGGTATAGATTTAACCTTAAAAGCAAGCGAAGGTAAACTTGATCCTGTTATAGGTAGAGAAGAAGA
AATCGAACGTTTAATGCAAATTTTAATACGCAAAACCAAAAACAACCCTATACTTTTAGGTGAACCAGGTGTAGGAAAAA
CAGCTATAGTGGAAGCTTTAGCACAAAGAATTATCAAAAAAGATGTTCCAAAATCTTTGCAAAATAAAAAAGTCATCGCT
CTTGATATGAGTGCTTTAATTGCAGGTGCAAAATACAGAGGAGAATTTGAAGATAGATTAAAAGCTGTGGTTAATGAAGT
GATAAAAAGTGAAAATATCATTCTTTTTATCGATGAAATTCACACTATAGTAGGAGCTGGAGCGAGTGAAGGCAGCATGG
ATGCGGCAAATATTTTAAAACCTGCTCTTGCAAGAGGTGAACTCCATACCATAGGCGCAACTACTTTAAAAGAATATCGT
AAATATTTTGAAAAAGATGCAGCCTTGCAACGCCGTTTTCAACCTGTAAATGTAGGTGAGCCAAGTGTTAATGAGGCTTT
GGCTATGTTAAGGGGTATAAAAGAAAAGCTTGAAATTCATCATAATGTAACCATAAATGATAGTGCTTTAGTAGCCGCAG
CTAAACTTTCAAAGCGTTATATAACAGATCGTTTTTTACCTGATAAGGCCATTGATTTAATCGATGAAGCTGCAGCTGAA
CTAAAAATGCAAATTGAAAGCGAACCAAGTTCTTTAAGAAAAGTACGCAAAGATATAGAAACTTTAGAAGTTGAAAATGA
AGCTTTAAAAATGGAAAATGACGAGAAAAATCAAAAAAGACTCGATGAAATCGCAAAAGAACTAGCCAATTTAAAAGAAA
AACAAAATGCCTTAAATTCACAGTTTGAAAATGAAAAAAGTGTTTTTGATGGTATAAGCGCTAAGAAAAAAGAAATTGAT
TTGCTTAAAAATGAAGCTTCTTTGGCTAAAGCTAGAGGTGAATTTCAAAAAGCAGCCGAGCTAGAGTATGGAAAAATTCC
AAGTCTTGAAAAAGAAGTAGAAATCTTAGAAGATAAATGGAAAAAAATGAGTGAAAATGGAGTTTTACTTAAAAATCAAG
TGGATGAGGATTTGGTTGCTGGAATTTTAAGCAAATGGACGGGTATTAGCGTGCAAAAAATGTTAACTTCTGAAAAACAA
AAATTCTTAGAAGTGGAAAAACATTTAAAAGAAAGTGTCATAGGACAAGATAAGGCCTTAAGTGCTTTATCTAGAGCCAT
TAAACGCAATAAAGCAGGACTTAATGCAGACAATAAACCTATAGGAAGCTTTTTATTTTTAGGGCCAACAGGGGTAGGAA
AAACACAATCAGCTAAAGCTTTGGCAAAATTTTTATTTGATGATGAAAAAGCAATGATTCGTTTTGATATGAGTGAATTT
ATGGAAAAACATAGTGTTTCAAGACTCTTAGGTGCACCTCCAGGGTACATAGGACATGAAGAAGGTGGAGAGCTTACTGA
AGCTGTGCGAAGAAAACCTTATAGCGTGCTTTTGTTTGATGAAGTTGAAAAAGCGCATAAAGATGTATTTAATGTGCTTT
TAGGGATTTTAGATGATGGTAGAGCAACCGATAGCAAAGGTGTAACAGTGGATTTTAAAAATACCATTATCATTTTAACT
TCTAATATCGCCTCAAGTGCCATTATGAATTTAAGCGGGAAAGAACAAGAAGATGCGGTAAAAAATGAGTTAAAAAATTT
CTTTAAACCTGAGTTTTTAAACCGCTTAGATGATATTATCACCTTTAATCCACTTGGAAAAGATGAAGCTTATGAAATAG
TTAAGCTTTTATTTAAAGATTTACAAATGAGCTTAGAAAACAAGGGAATAAAAGCAAGTTTAAGCGAAAATGCAGCCCTT
TTAATCGCTAAAGATGGTTTTGACCCTGATTTTGGTGCTAGACCTTTAAGAAGAGCTATTTATGATCTTATAGAAGATAA
ATTAAGCGATATGATACTTGCTGATGAACTTCATGAAAATGATAGCATTATCATTGATGCAAAAGATGATGAAATAATCA
TTAAAAAAGCTTAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (765-844)

• AAA lid domain (AAA_lid_9) (342-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (19-70)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-145)

• AAA domain (Cdc48 subfamily) (AAA_2) (599-759)

• ATPase family associated with various cellular activities (AAA) (AAA) (204-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.669	98.6	0.431
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	41.332	100	0.42