Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ABYM97_RS05820 Genome accession   NZ_CP159874
Coordinates   1109671..1110120 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis strain PY79     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1104671..1115120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABYM97_RS05785 (ABYM97_05785) yckA 1104822..1105502 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  ABYM97_RS05790 (ABYM97_05790) yckB 1105512..1106375 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  ABYM97_RS05795 (ABYM97_05795) - 1106537..1106734 (+) 198 WP_119122841.1 hypothetical protein -
  ABYM97_RS05800 (ABYM97_05800) yckC 1106753..1107208 (+) 456 WP_003246356.1 RDD family protein -
  ABYM97_RS05805 (ABYM97_05805) yckD 1107290..1107622 (+) 333 WP_003246247.1 YckD family protein -
  ABYM97_RS05810 (ABYM97_05810) bglC 1107776..1109209 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  ABYM97_RS05815 (ABYM97_05815) nin/comJ 1109246..1109644 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  ABYM97_RS05820 (ABYM97_05820) nucA/comI 1109671..1110120 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  ABYM97_RS05825 (ABYM97_05825) tlpC 1110288..1112008 (-) 1721 Protein_1133 methyl-accepting chemotaxis protein TlpC -
  ABYM97_RS05830 (ABYM97_05830) hxlB 1112119..1112676 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  ABYM97_RS05835 (ABYM97_05835) hxlA 1112682..1113314 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  ABYM97_RS05840 (ABYM97_05840) hxlR 1113547..1113909 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=1016346 ABYM97_RS05820 WP_003246436.1 1109671..1110120(-) (nucA/comI) [Bacillus subtilis strain PY79]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1016346 ABYM97_RS05820 WP_003246436.1 1109671..1110120(-) (nucA/comI) [Bacillus subtilis strain PY79]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment