Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABYM97_RS03930 Genome accession   NZ_CP159874
Coordinates   734180..734902 (+) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain PY79     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 729180..739902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABYM97_RS03905 (ABYM97_03905) degS 729491..730648 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ABYM97_RS03910 (ABYM97_03910) degU 730731..731420 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABYM97_RS03915 (ABYM97_03915) fakBA 731518..732363 (+) 846 WP_003244125.1 DegV family protein -
  ABYM97_RS03920 (ABYM97_03920) comFA 732469..733860 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  ABYM97_RS03925 (ABYM97_03925) comFB 733920..734216 (+) 297 WP_003227989.1 late competence protein ComFB -
  ABYM97_RS03930 (ABYM97_03930) comFC 734180..734902 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  ABYM97_RS03935 (ABYM97_03935) yvyF 734976..735395 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ABYM97_RS03940 (ABYM97_03940) flgM 735476..735742 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABYM97_RS03945 (ABYM97_03945) flgN 735758..736240 (+) 483 WP_003227999.1 flagellar protein FlgN -
  ABYM97_RS03950 (ABYM97_03950) flgK 736259..737782 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ABYM97_RS03955 (ABYM97_03955) flgL 737793..738689 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  ABYM97_RS03960 (ABYM97_03960) yviE 738736..739311 (+) 576 WP_003243053.1 DUF6470 family protein -
  ABYM97_RS03965 (ABYM97_03965) fliW 739332..739763 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=1016342 ABYM97_RS03930 WP_003227991.1 734180..734902(+) (comFC) [Bacillus subtilis strain PY79]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1016342 ABYM97_RS03930 WP_003227991.1 734180..734902(+) (comFC) [Bacillus subtilis strain PY79]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment