Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABJ98_RS00460 Genome accession   NZ_AP027599
Coordinates   97486..98115 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LR-71-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 92486..103115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ98_RS00440 (VEE28_00850) ycbZ 92887..94647 (-) 1761 WP_113417687.1 Lon protease family protein -
  AABJ98_RS00445 (VEE28_00860) matP 94833..95285 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABJ98_RS00450 (VEE28_00870) ompA 95361..96401 (-) 1041 WP_000750416.1 porin OmpA -
  AABJ98_RS00455 (VEE28_00890) sulA 96758..97267 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABJ98_RS00460 (VEE28_00900) sxy/tfoX 97486..98115 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABJ98_RS00465 (VEE28_00910) yccS 98078..100240 (-) 2163 WP_000875061.1 YccS family putative transporter -
  AABJ98_RS00470 (VEE28_00920) yccF 100250..100696 (-) 447 WP_001261235.1 YccF domain-containing protein -
  AABJ98_RS00475 (VEE28_00930) helD 100819..102873 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=101632 AABJ98_RS00460 WP_000839153.1 97486..98115(+) (sxy/tfoX) [Escherichia coli strain LR-71-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101632 AABJ98_RS00460 WP_000839153.1 97486..98115(+) (sxy/tfoX) [Escherichia coli strain LR-71-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment