Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ABNX04_RS06990 Genome accession   NZ_CP159868
Coordinates   1397009..1397605 (+) Length   198 a.a.
NCBI ID   WP_012117447.1    Uniprot ID   -
Organism   Bacillus velezensis strain JLU-1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392009..1402605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX04_RS06960 (ABNX04_06960) - 1392223..1392678 (+) 456 WP_007409622.1 flavodoxin -
  ABNX04_RS06965 (ABNX04_06965) dapD 1392760..1393470 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ABNX04_RS06970 (ABNX04_06970) - 1393541..1394665 (+) 1125 WP_038457856.1 N-acetyldiaminopimelate deacetylase -
  ABNX04_RS06975 (ABNX04_06975) - 1394726..1394971 (+) 246 WP_003154596.1 YkuS family protein -
  ABNX04_RS06980 (ABNX04_06980) - 1395005..1395811 (-) 807 WP_032874739.1 mechanosensitive ion channel family protein -
  ABNX04_RS06985 (ABNX04_06985) - 1396100..1396558 (+) 459 WP_038457859.1 TlpA disulfide reductase family protein -
  ABNX04_RS06990 (ABNX04_06990) rok 1397009..1397605 (+) 597 WP_012117447.1 transcriptional regulator Rok Regulator
  ABNX04_RS06995 (ABNX04_06995) - 1397629..1398621 (-) 993 WP_354664756.1 sporulation protein -
  ABNX04_RS07000 (ABNX04_07000) - 1398765..1399367 (+) 603 WP_007611112.1 molybdenum cofactor guanylyltransferase -
  ABNX04_RS07005 (ABNX04_07005) - 1399419..1400438 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  ABNX04_RS07010 (ABNX04_07010) glp 1400456..1401748 (+) 1293 WP_038457863.1 gephyrin-like molybdotransferase Glp -
  ABNX04_RS07015 (ABNX04_07015) mobB 1401709..1402230 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22495.54 Da        Isoelectric Point: 9.6909

>NTDB_id=1016272 ABNX04_RS06990 WP_012117447.1 1397009..1397605(+) (rok) [Bacillus velezensis strain JLU-1]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
AQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1016272 ABNX04_RS06990 WP_012117447.1 1397009..1397605(+) (rok) [Bacillus velezensis strain JLU-1]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
GCACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTTCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment