Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AABJ48_RS05945 Genome accession   NZ_AP027595
Coordinates   1180852..1181481 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain LR-64-2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1175852..1186481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABJ48_RS05930 (VEE33_11200) helD 1176094..1178148 (-) 2055 WP_001295354.1 DNA helicase IV -
  AABJ48_RS05935 (VEE33_11210) yccF 1178271..1178717 (+) 447 WP_001261235.1 YccF domain-containing protein -
  AABJ48_RS05940 (VEE33_11220) yccS 1178727..1180889 (+) 2163 WP_000875061.1 YccS family putative transporter -
  AABJ48_RS05945 (VEE33_11230) sxy/tfoX 1180852..1181481 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  AABJ48_RS05950 (VEE33_11240) sulA 1181700..1182209 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  AABJ48_RS05955 (VEE33_11260) ompA 1182566..1183606 (+) 1041 WP_021544773.1 porin OmpA -
  AABJ48_RS05960 (VEE33_11270) matP 1183682..1184134 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  AABJ48_RS05965 (VEE33_11280) ycbZ 1184320..1186080 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=101613 AABJ48_RS05945 WP_000839153.1 1180852..1181481(-) (sxy/tfoX) [Escherichia coli strain LR-64-2]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=101613 AABJ48_RS05945 WP_000839153.1 1180852..1181481(-) (sxy/tfoX) [Escherichia coli strain LR-64-2]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment