Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DQL85_RS03765 Genome accession   NZ_LS483308
Coordinates   755477..756451 (+) Length   324 a.a.
NCBI ID   WP_031860544.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC13137     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 750477..761451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL85_RS03745 (NCTC13137_00694) nrdI 751547..751945 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  DQL85_RS03750 (NCTC13137_00695) nrdE 751908..754013 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  DQL85_RS03755 (NCTC13137_00696) nrdF 754131..755102 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  DQL85_RS03760 - 755283..755438 (+) 156 WP_000499195.1 hypothetical protein -
  DQL85_RS03765 (NCTC13137_00697) ceuB 755477..756451 (+) 975 WP_031860544.1 ABC transporter permease Machinery gene
  DQL85_RS03770 (NCTC13137_00698) - 756435..757391 (+) 957 WP_001245577.1 iron chelate uptake ABC transporter family permease subunit -
  DQL85_RS03775 (NCTC13137_00699) - 757388..758149 (+) 762 WP_000616840.1 ABC transporter ATP-binding protein -
  DQL85_RS03780 (NCTC13137_00700) - 758268..759296 (+) 1029 WP_006189812.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  DQL85_RS03785 (NCTC13137_00701) - 759613..759927 (-) 315 WP_001127269.1 CHY zinc finger protein -
  DQL85_RS03790 (NCTC13137_00702) murB 759945..760868 (-) 924 WP_000608435.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 35710.26 Da        Isoelectric Point: 10.1194

>NTDB_id=1016072 DQL85_RS03765 WP_031860544.1 755477..756451(+) (ceuB) [Staphylococcus aureus strain NCTC13137]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQQ

Nucleotide


Download         Length: 975 bp        

>NTDB_id=1016072 DQL85_RS03765 WP_031860544.1 755477..756451(+) (ceuB) [Staphylococcus aureus strain NCTC13137]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTCTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACAATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

98.765

0.469

Multiple sequence alignment