Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APECO2_RS22920 Genome accession   NZ_CP006834
Coordinates   4384165..4384641 (+) Length   158 a.a.
NCBI ID   WP_001186710.1    Uniprot ID   -
Organism   Escherichia coli APEC O2-211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4379165..4389641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO2_RS22885 (APECO2_18015) - 4379844..4380728 (+) 885 WP_001116802.1 GTPase family protein -
  APECO2_RS22890 (APECO2_27400) - 4380931..4381611 (+) 681 WP_001593697.1 helix-turn-helix transcriptional regulator -
  APECO2_RS22895 (APECO2_18030) - 4381759..4382436 (+) 678 WP_001097306.1 hypothetical protein -
  APECO2_RS22900 (APECO2_27405) - 4382442..4382675 (+) 234 WP_001278287.1 DUF905 family protein -
  APECO2_RS22910 (APECO2_18040) - 4382774..4383592 (+) 819 WP_001234631.1 DUF932 domain-containing protein -
  APECO2_RS22915 (APECO2_18045) - 4383674..4384153 (+) 480 WP_000860065.1 antirestriction protein -
  APECO2_RS22920 (APECO2_18050) radC 4384165..4384641 (+) 477 WP_001186710.1 JAB domain-containing protein Machinery gene
  APECO2_RS22925 (APECO2_18055) - 4384704..4384925 (+) 222 WP_000692303.1 DUF987 domain-containing protein -
  APECO2_RS22930 (APECO2_18065) cbeA 4385088..4385456 (+) 369 WP_001278232.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  APECO2_RS22935 (APECO2_18070) - 4385546..4385920 (+) 375 WP_047340816.1 TA system toxin CbtA family protein -
  APECO2_RS22940 (APECO2_18075) - 4385917..4386405 (+) 489 WP_000777541.1 DUF5983 family protein -
  APECO2_RS22945 (APECO2_18080) - 4386417..4386614 (+) 198 WP_000839281.1 DUF957 domain-containing protein -
  APECO2_RS22950 (APECO2_18085) - 4386711..4387280 (+) 570 WP_001290247.1 DUF4942 domain-containing protein -
  APECO2_RS22955 (APECO2_18090) yghD 4387560..4388096 (-) 537 WP_000942807.1 GspM family type II secretion system protein YghD -
  APECO2_RS22960 (APECO2_18095) gspL 4388098..4389276 (-) 1179 WP_000097200.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17630.26 Da        Isoelectric Point: 7.6151

>NTDB_id=101607 APECO2_RS22920 WP_001186710.1 4384165..4384641(+) (radC) [Escherichia coli APEC O2-211]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=101607 APECO2_RS22920 WP_001186710.1 4384165..4384641(+) (radC) [Escherichia coli APEC O2-211]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment