Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APECO2_RS22580 Genome accession   NZ_CP006834
Coordinates   4325560..4326036 (+) Length   158 a.a.
NCBI ID   WP_001366855.1    Uniprot ID   -
Organism   Escherichia coli APEC O2-211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4320560..4331036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO2_RS22550 (APECO2_17710) - 4321244..4322128 (+) 885 WP_000010402.1 GTPase family protein -
  APECO2_RS22555 (APECO2_27315) - 4322331..4323011 (+) 681 WP_001282919.1 helix-turn-helix transcriptional regulator -
  APECO2_RS22560 (APECO2_17725) - 4323159..4323836 (+) 678 WP_001097302.1 hypothetical protein -
  APECO2_RS22565 (APECO2_27320) - 4323842..4324075 (+) 234 WP_001278287.1 DUF905 family protein -
  APECO2_RS22570 (APECO2_17735) - 4324165..4324983 (+) 819 WP_001175148.1 DUF932 domain-containing protein -
  APECO2_RS22575 (APECO2_17740) - 4325065..4325544 (+) 480 WP_000844100.1 antirestriction protein -
  APECO2_RS22580 (APECO2_17745) radC 4325560..4326036 (+) 477 WP_001366855.1 JAB domain-containing protein Machinery gene
  APECO2_RS22585 (APECO2_17750) - 4326099..4326320 (+) 222 WP_000692309.1 DUF987 domain-containing protein -
  APECO2_RS22590 (APECO2_17755) - 4326400..4326774 (+) 375 WP_001285415.1 type IV toxin-antitoxin system YeeU family antitoxin -
  APECO2_RS22595 (APECO2_17760) - 4326821..4327198 (+) 378 WP_000854735.1 TA system toxin CbtA family protein -
  APECO2_RS22600 (APECO2_17765) - 4327195..4327683 (+) 489 WP_000761677.1 DUF5983 family protein -
  APECO2_RS22605 (APECO2_17770) - 4327695..4327892 (+) 198 WP_000839291.1 DUF957 domain-containing protein -
  APECO2_RS22610 (APECO2_17775) - 4327977..4328843 (+) 867 WP_001280433.1 DUF4942 domain-containing protein -
  APECO2_RS22615 (APECO2_17780) - 4328915..4329178 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  APECO2_RS22620 (APECO2_17785) - 4329175..4329501 (+) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17625.24 Da        Isoelectric Point: 7.2517

>NTDB_id=101606 APECO2_RS22580 WP_001366855.1 4325560..4326036(+) (radC) [Escherichia coli APEC O2-211]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=101606 APECO2_RS22580 WP_001366855.1 4325560..4326036(+) (radC) [Escherichia coli APEC O2-211]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAGCCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCGGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGGCTTATCACTGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392