Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   APECO2_RS20710 Genome accession   NZ_CP006834
Coordinates   3936623..3937138 (-) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli APEC O2-211     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3931623..3942138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO2_RS20685 (APECO2_15885) ygaZ 3932022..3932759 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  APECO2_RS20690 (APECO2_15890) ygaH 3932749..3933084 (+) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  APECO2_RS20695 (APECO2_15895) emrR 3933175..3933705 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  APECO2_RS20700 (APECO2_15900) emrA 3933832..3935004 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  APECO2_RS20705 (APECO2_15905) emrB 3935021..3936559 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  APECO2_RS20710 (APECO2_15910) luxS 3936623..3937138 (-) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  APECO2_RS20715 (APECO2_15915) gshA 3937288..3938844 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  APECO2_RS20720 (APECO2_15920) yqaA 3938917..3939345 (-) 429 WP_001287454.1 YqaA family protein -
  APECO2_RS20725 (APECO2_15925) yqaB 3939342..3939908 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  APECO2_RS20755 (APECO2_15955) csrA 3941233..3941418 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=101600 APECO2_RS20710 WP_001130208.1 3936623..3937138(-) (luxS) [Escherichia coli APEC O2-211]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=101600 APECO2_RS20710 WP_001130208.1 3936623..3937138(-) (luxS) [Escherichia coli APEC O2-211]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment