Detailed information NTG1015948

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: DQM88_RS22535
• Genome accession: NZ_LS483303
• Coordinates: 4409117..4410142 (+)
• Length: 341 a.a.
• NCBI ID: WP_094318945.1
• Uniprot ID: -
• Organism: Escherichia coli strain NCTC9967
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4404117..4415142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM88_RS22510 (NCTC9967_04277)	metJ	4404554..4404871 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
DQM88_RS22515 (NCTC9967_04278)	yiiX	4405055..4405663 (+)	609	WP_000797341.1	YiiX family permuted papain-like enzyme	-
DQM88_RS22520 (NCTC9967_04279)	-	4405670..4406293 (+)	624	WP_000720774.1	TIGR02117 family protein	-
DQM88_RS22525 (NCTC9967_04280)	rpmE	4406348..4406560 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
DQM88_RS22530 (NCTC9967_04281)	priA	4406763..4408961 (+)	2199	WP_032279233.1	primosomal protein N'	Machinery gene
DQM88_RS22535 (NCTC9967_04282)	cytR	4409117..4410142 (+)	1026	WP_094318945.1	DNA-binding transcriptional regulator CytR	Regulator
DQM88_RS22540 (NCTC9967_04283)	ftsN	4410234..4411193 (+)	960	WP_071598226.1	cell division protein FtsN	-
DQM88_RS22545 (NCTC9967_04284)	hslV	4411286..4411816 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
DQM88_RS22550 (NCTC9967_04285)	hslU	4411826..4413157 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
DQM88_RS22555 (NCTC9967_04286)	menA	4413224..4414150 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
DQM88_RS22560 (NCTC9967_04287)	rraA	4414243..4414728 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
DQM88_RS22565 (NCTC9967_04288)	zapB	4414813..4415058 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37804.81 Da
• Isoelectric Point: 6.8161

>NTDB_id=1015948 DQM88_RS22535 WP_094318945.1 4409117..4410142(+) (cytR) [Escherichia coli strain NCTC9967]
MKAKKQKTAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVDKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=1015948 DQM88_RS22535 WP_094318945.1 4409117..4410142(+) (cytR) [Escherichia coli strain NCTC9967]
GTGAAAGCGAAGAAGCAGAAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGATAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625