Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABXT49_RS06395 | Genome accession | NZ_CP159803 |
| Coordinates | 1267925..1268878 (+) | Length | 317 a.a. |
| NCBI ID | WP_416651299.1 | Uniprot ID | - |
| Organism | Candidatus Pseudothioglobus sp. Uisw_086 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1262925..1273878
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABXT49_RS06365 (ABXT49_06365) | - | 1262925..1263782 (+) | 858 | WP_416651288.1 | transporter substrate-binding domain-containing protein | - |
| ABXT49_RS06370 (ABXT49_06370) | - | 1263830..1264807 (+) | 978 | WP_416651290.1 | amino acid ABC transporter permease | - |
| ABXT49_RS06375 (ABXT49_06375) | - | 1264810..1265565 (+) | 756 | WP_416651292.1 | amino acid ABC transporter ATP-binding protein | - |
| ABXT49_RS06380 (ABXT49_06380) | ltaE | 1265570..1266631 (-) | 1062 | WP_416651293.1 | low-specificity L-threonine aldolase | - |
| ABXT49_RS06385 (ABXT49_06385) | - | 1266645..1267301 (-) | 657 | WP_416651295.1 | hypothetical protein | - |
| ABXT49_RS06390 (ABXT49_06390) | hemJ | 1267349..1267774 (-) | 426 | WP_416651297.1 | protoporphyrinogen oxidase HemJ | - |
| ABXT49_RS06395 (ABXT49_06395) | pilA | 1267925..1268878 (+) | 954 | WP_416651299.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABXT49_RS06400 (ABXT49_06400) | - | 1268888..1269178 (-) | 291 | WP_416651300.1 | 4a-hydroxytetrahydrobiopterin dehydratase | - |
| ABXT49_RS06405 (ABXT49_06405) | hemC | 1269180..1270097 (-) | 918 | WP_416653545.1 | hydroxymethylbilane synthase | - |
| ABXT49_RS06410 (ABXT49_06410) | argH | 1270313..1271698 (+) | 1386 | WP_416651302.1 | argininosuccinate lyase | - |
| ABXT49_RS06415 (ABXT49_06415) | fmt | 1271698..1272627 (+) | 930 | WP_416651304.1 | methionyl-tRNA formyltransferase | - |
| ABXT49_RS06420 (ABXT49_06420) | - | 1272638..1273087 (-) | 450 | WP_416651306.1 | tRNA (cytidine(34)-2'-O)-methyltransferase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 34582.82 Da Isoelectric Point: 6.1674
>NTDB_id=1015918 ABXT49_RS06395 WP_416651299.1 1267925..1268878(+) (pilA) [Candidatus Pseudothioglobus sp. Uisw_086]
MLNFFKKNQSPESEGETKKPSLKDRLFKSKTKLGDGLSSLLMGKKKIDEALLEDLEMLLIGADIGIQTTDKVIESVRKKA
SRKELKDSDGLYELIKIELESFLIKENLLQTNVDKTFVILVVGINGAGKTTTIGKLAKLFQSEGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVIAQKTGADAASVVYDAYQSAIAKNIDILIADTAGRLHTQDNLMQELEKIKRVLKKHNEDAPHETLL
VIDGGSGQNAIQQANEFHKSINLSGLAVTKLDGTAKGGVLFAISDSLKLPIRFIGVGEAIDDLKPFNAKDFVDALFD
MLNFFKKNQSPESEGETKKPSLKDRLFKSKTKLGDGLSSLLMGKKKIDEALLEDLEMLLIGADIGIQTTDKVIESVRKKA
SRKELKDSDGLYELIKIELESFLIKENLLQTNVDKTFVILVVGINGAGKTTTIGKLAKLFQSEGKSVMLAAGDTFRAAAV
EQLQVWGERNDIPVIAQKTGADAASVVYDAYQSAIAKNIDILIADTAGRLHTQDNLMQELEKIKRVLKKHNEDAPHETLL
VIDGGSGQNAIQQANEFHKSINLSGLAVTKLDGTAKGGVLFAISDSLKLPIRFIGVGEAIDDLKPFNAKDFVDALFD
Nucleotide
Download Length: 954 bp
>NTDB_id=1015918 ABXT49_RS06395 WP_416651299.1 1267925..1268878(+) (pilA) [Candidatus Pseudothioglobus sp. Uisw_086]
ATGCTAAACTTTTTTAAAAAAAATCAAAGCCCTGAGTCTGAAGGTGAGACAAAAAAACCTTCACTAAAAGATCGGCTATT
TAAATCCAAAACTAAACTTGGAGATGGTCTTTCATCCCTTCTTATGGGTAAAAAGAAAATAGATGAAGCACTTCTTGAAG
ATTTAGAAATGCTTTTAATTGGAGCAGATATAGGTATTCAAACAACTGACAAGGTTATTGAATCTGTGAGAAAAAAAGCA
TCTAGAAAAGAACTTAAGGACAGTGATGGTCTTTATGAACTTATAAAAATTGAACTTGAATCATTCTTAATTAAAGAAAA
TTTACTACAAACAAATGTTGATAAAACTTTTGTTATTCTTGTTGTTGGTATCAATGGTGCTGGAAAAACTACCACGATTG
GTAAGCTTGCTAAGCTATTTCAAAGTGAGGGAAAATCTGTAATGCTTGCAGCTGGAGACACTTTTCGTGCTGCTGCTGTT
GAGCAGCTTCAAGTTTGGGGAGAGAGGAATGATATTCCAGTCATCGCTCAAAAAACAGGGGCAGACGCAGCCTCGGTTGT
ATATGATGCTTACCAGTCAGCGATTGCTAAAAATATTGATATCTTAATTGCAGATACTGCAGGAAGACTTCATACACAAG
ATAATTTAATGCAAGAACTTGAAAAAATTAAGAGAGTTCTTAAAAAGCATAATGAAGATGCGCCACATGAAACTCTCTTA
GTTATCGATGGTGGGTCAGGTCAAAATGCGATTCAACAAGCAAATGAATTTCATAAATCCATTAACCTATCAGGACTCGC
TGTTACTAAACTTGATGGAACAGCTAAAGGTGGAGTTTTATTTGCAATTTCAGACTCTCTTAAACTGCCTATTCGTTTTA
TTGGGGTTGGGGAAGCAATCGATGATTTAAAACCTTTTAATGCAAAAGATTTTGTTGACGCTTTATTTGATTAG
ATGCTAAACTTTTTTAAAAAAAATCAAAGCCCTGAGTCTGAAGGTGAGACAAAAAAACCTTCACTAAAAGATCGGCTATT
TAAATCCAAAACTAAACTTGGAGATGGTCTTTCATCCCTTCTTATGGGTAAAAAGAAAATAGATGAAGCACTTCTTGAAG
ATTTAGAAATGCTTTTAATTGGAGCAGATATAGGTATTCAAACAACTGACAAGGTTATTGAATCTGTGAGAAAAAAAGCA
TCTAGAAAAGAACTTAAGGACAGTGATGGTCTTTATGAACTTATAAAAATTGAACTTGAATCATTCTTAATTAAAGAAAA
TTTACTACAAACAAATGTTGATAAAACTTTTGTTATTCTTGTTGTTGGTATCAATGGTGCTGGAAAAACTACCACGATTG
GTAAGCTTGCTAAGCTATTTCAAAGTGAGGGAAAATCTGTAATGCTTGCAGCTGGAGACACTTTTCGTGCTGCTGCTGTT
GAGCAGCTTCAAGTTTGGGGAGAGAGGAATGATATTCCAGTCATCGCTCAAAAAACAGGGGCAGACGCAGCCTCGGTTGT
ATATGATGCTTACCAGTCAGCGATTGCTAAAAATATTGATATCTTAATTGCAGATACTGCAGGAAGACTTCATACACAAG
ATAATTTAATGCAAGAACTTGAAAAAATTAAGAGAGTTCTTAAAAAGCATAATGAAGATGCGCCACATGAAACTCTCTTA
GTTATCGATGGTGGGTCAGGTCAAAATGCGATTCAACAAGCAAATGAATTTCATAAATCCATTAACCTATCAGGACTCGC
TGTTACTAAACTTGATGGAACAGCTAAAGGTGGAGTTTTATTTGCAATTTCAGACTCTCTTAAACTGCCTATTCGTTTTA
TTGGGGTTGGGGAAGCAATCGATGATTTAAAACCTTTTAATGCAAAAGATTTTGTTGACGCTTTATTTGATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
51.645 |
95.899 |
0.495 |