Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   APECO2_RS17055 Genome accession   NZ_CP006834
Coordinates   3212520..3212996 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli APEC O2-211     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3207520..3217996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APECO2_RS17020 (APECO2_12375) - 3207684..3208589 (+) 906 WP_047340773.1 diguanylate cyclase regulator RdcB family protein -
  APECO2_RS17025 (APECO2_12380) - 3208586..3209656 (+) 1071 WP_047340774.1 patatin-like phospholipase family protein -
  APECO2_RS17030 (APECO2_12385) - 3209792..3210475 (+) 684 WP_000775500.1 hypothetical protein -
  APECO2_RS17035 (APECO2_12390) - 3210491..3210901 (+) 411 WP_000846713.1 hypothetical protein -
  APECO2_RS17045 (APECO2_12395) - 3211122..3211943 (+) 822 WP_032285347.1 DUF932 domain-containing protein -
  APECO2_RS17050 (APECO2_12400) - 3212025..3212504 (+) 480 WP_000860076.1 antirestriction protein -
  APECO2_RS17055 (APECO2_12405) radC 3212520..3212996 (+) 477 WP_001186774.1 JAB domain-containing protein Machinery gene
  APECO2_RS17060 (APECO2_12410) yeeT 3213059..3213280 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  APECO2_RS17065 (APECO2_12415) cbeA 3213354..3213722 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  APECO2_RS17070 (APECO2_12420) cbtA 3213811..3214184 (+) 374 Protein_3121 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  APECO2_RS17075 (APECO2_12425) yeeW 3214181..3214375 (+) 195 WP_000988599.1 DUF5983 family protein -
  APECO2_RS17080 (APECO2_12430) - 3214409..3214501 (+) 93 Protein_3123 DUF957 domain-containing protein -
  APECO2_RS28925 (APECO2_26890) - 3214790..3214927 (-) 138 Protein_3124 transposase domain-containing protein -
  APECO2_RS28930 (APECO2_26895) - 3214990..3215172 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  APECO2_RS17095 (APECO2_12435) tmaR 3215273..3215602 (-) 330 WP_000450409.1 DUF496 family protein -
  APECO2_RS17100 (APECO2_12440) yeeA 3215774..3216832 (-) 1059 WP_001200905.1 FUSC family protein -
  APECO2_RS17105 (APECO2_12445) sbmC 3217030..3217503 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=101589 APECO2_RS17055 WP_001186774.1 3212520..3212996(+) (radC) [Escherichia coli APEC O2-211]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=101589 APECO2_RS17055 WP_001186774.1 3212520..3212996(+) (radC) [Escherichia coli APEC O2-211]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment