Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL80_RS09300 Genome accession   NZ_LS483302
Coordinates   1866398..1867138 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC8726     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861398..1872138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL80_RS09275 (NCTC8726_01756) hemH 1862274..1863197 (-) 924 WP_111680434.1 ferrochelatase -
  DQL80_RS09280 (NCTC8726_01757) hemE 1863254..1864291 (-) 1038 WP_000233540.1 uroporphyrinogen decarboxylase -
  DQL80_RS09285 - 1864281..1864367 (-) 87 WP_031875110.1 hypothetical protein -
  DQL80_RS09290 (NCTC8726_01758) traP 1864554..1865057 (+) 504 WP_000737983.1 signal transduction protein TRAP -
  DQL80_RS09295 (NCTC8726_01759) ecsB 1865182..1866405 (-) 1224 WP_111680435.1 ABC transporter permease EcsB -
  DQL80_RS09300 (NCTC8726_01760) pptA 1866398..1867138 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  DQL80_RS09305 (NCTC8726_01761) - 1867272..1867694 (+) 423 WP_000004981.1 HIT family protein -
  DQL80_RS09310 (NCTC8726_01762) - 1867836..1868201 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  DQL80_RS09315 (NCTC8726_01763) - 1868933..1869490 (+) 558 WP_000477957.1 DUF3267 domain-containing protein -
  DQL80_RS09320 (NCTC8726_01764) - 1869695..1870657 (+) 963 WP_000782119.1 foldase protein PrsA -
  DQL80_RS09325 (NCTC8726_01765) yhaM 1870778..1871719 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=1015863 DQL80_RS09300 WP_000216874.1 1866398..1867138(-) (pptA) [Staphylococcus aureus strain NCTC8726]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1015863 DQL80_RS09300 WP_000216874.1 1866398..1867138(-) (pptA) [Staphylococcus aureus strain NCTC8726]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTAAATGGTGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATATACGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTTCTTGGCTTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACGTTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545

Multiple sequence alignment