Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DQL80_RS03750 Genome accession   NZ_LS483302
Coordinates   758446..759528 (+) Length   360 a.a.
NCBI ID   WP_111680136.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC8726     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 753446..764528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL80_RS03730 (NCTC8726_00701) gdpS 753816..754886 (-) 1071 WP_000460983.1 GGDEF domain-containing protein GdpS -
  DQL80_RS03735 (NCTC8726_00702) - 755204..756259 (+) 1056 WP_111680133.1 glycosyltransferase family 4 protein -
  DQL80_RS03740 (NCTC8726_00703) - 756431..757072 (-) 642 WP_111680134.1 YigZ family protein -
  DQL80_RS03745 (NCTC8726_00704) fakB1 757216..758082 (+) 867 WP_111680135.1 fatty acid kinase binding subunit FakB1 -
  DQL80_RS03750 (NCTC8726_00705) comFA 758446..759528 (+) 1083 WP_111680136.1 DEAD/DEAH box helicase Machinery gene
  DQL80_RS03755 (NCTC8726_00706) - 759521..760195 (+) 675 WP_111680137.1 ComF family protein -
  DQL80_RS03760 (NCTC8726_00707) hpf 760256..760828 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DQL80_RS03765 (NCTC8726_00708) secA 761243..763774 (+) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  DQL80_RS03770 - 763816..763909 (+) 94 Protein_699 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42024.45 Da        Isoelectric Point: 9.5935

>NTDB_id=1015809 DQL80_RS03750 WP_111680136.1 758446..759528(+) (comFA) [Staphylococcus aureus strain NCTC8726]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPIPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGQFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=1015809 DQL80_RS03750 WP_111680136.1 758446..759528(+) (comFA) [Staphylococcus aureus strain NCTC8726]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACACATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTAAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAATTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACAATTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

39.233

94.167

0.369