Detailed information NTG1015752

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABVQ18_RS02280
• Genome accession: NZ_CP159767
• Coordinates: 505039..506313 (-)
• Length: 424 a.a.
• NCBI ID: WP_370388439.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer05
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 500039..511313

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABVQ18_RS02275 (ABVQ18_16270)	-	501766..504690 (-)	2925	WP_370388438.1	reverse transcriptase domain-containing protein	-
ABVQ18_RS02280 (ABVQ18_12780)	pilA	505039..506313 (-)	1275	WP_370388439.1	signal recognition particle-docking protein FtsY	Machinery gene
ABVQ18_RS02285 (ABVQ18_16275)	-	506720..507268 (-)	549	WP_370388440.1	5'-3'-deoxyribonucleotidase	-
ABVQ18_RS02290 (ABVQ18_12790)	ruvA	507310..507888 (-)	579	WP_100151497.1	Holliday junction branch migration protein RuvA	-
ABVQ18_RS02295 (ABVQ18_12795)	-	507967..508662 (-)	696	WP_370388441.1	septal ring lytic transglycosylase RlpA family protein	-
ABVQ18_RS02300 (ABVQ18_16280)	-	509040..509750 (-)	711	WP_370388442.1	ComF family protein	-
ABVQ18_RS02305 (ABVQ18_16285)	bioH	509749..510501 (+)	753	WP_267408663.1	pimeloyl-ACP methyl ester esterase BioH	-
ABVQ18_RS02310 (ABVQ18_12820)	-	510498..511313 (+)	816	WP_370388443.1	class I SAM-dependent methyltransferase	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 45389.44 Da
• Isoelectric Point: 4.5714

>NTDB_id=1015752 ABVQ18_RS02280 WP_370388439.1 505039..506313(-) (pilA) [Snodgrassella alvi strain Acer05]
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHTQPEPAASHQSVEEHTANVAVSESTATETTEDIIVPAAVDEP
AAIATSTESEVVQAPASENTIVIPVETTEIPSETDKPARLGWAARLKQGLSKSRNQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPADKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GEGIDDLRPFDAKAFVDALIEDEE

Nucleotide

• Length: 1275 bp

>NTDB_id=1015752 ABVQ18_RS02280 WP_370388439.1 505039..506313(-) (pilA) [Snodgrassella alvi strain Acer05]
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCGCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATACCCAGCCTGAACCGGCTGCTTCTCACCAGAGCGTAGAAGAGCACA
CAGCGAATGTAGCCGTCTCCGAATCAACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCTGCCGTAGATGAACCA
GCCGCCATTGCCACCAGCACGGAATCAGAGGTTGTTCAGGCTCCGGCCAGCGAAAACACCATAGTGATTCCTGTAGAAAC
CACAGAAATCCCTAGCGAAACAGACAAACCAGCTCGGCTGGGCTGGGCAGCACGGCTCAAACAGGGTCTAAGCAAATCGC
GCAACCAGATGGCCAAATCGCTAGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTACGAAGAGCTGGAAACA
GTATTGCTCACCAGTGATATGGGTATCGAAGCCACCGAAAAACTACTGGCACAGGTACGCCAGCGCGTTACCCTGAAAGG
ATTGAAAAACGGAAACGAACTGCGAAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCCTTGT
CCATACCTGCTGATAAAAAACCTTTTGTTATCATGATGGCTGGCGTAAACGGCGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTCTTGGCCGCAGGCGACACCTTCCGTGCAGCAGCCCGCGAGCA
ATTACAGCAATGGGGTGAGCGCAATAATGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCCGCCGTCTGCTTCGATG
CTCTTGAAGCAGCCAAAGCACGTGGTATTGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAGTCATGCTGGTACTCGA
TGCCAACGTCGGCCAGAACGCCATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCCTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCGGTACGCTTCATAGGTGTA
GGCGAAGGCATCGACGATTTACGCCCGTTTGACGCCAAAGCATTTGTAGATGCATTGATTGAGGATGAGGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (221-420)

• SRP54-type protein, helical bundle domain (SRP54_N) (137-202)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	64.858	100	0.649