Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   ABXR87_RS16115 Genome accession   NZ_CP159763
Coordinates   3392847..3393647 (-) Length   266 a.a.
NCBI ID   WP_188137546.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB11-AUFP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3387847..3398647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXR87_RS16095 (ABXR87_16095) - 3388912..3389610 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  ABXR87_RS16100 (ABXR87_16100) hisS 3389639..3390931 (-) 1293 WP_000095251.1 histidine--tRNA ligase -
  ABXR87_RS16105 (ABXR87_16105) ispG 3390928..3392043 (-) 1116 WP_002067329.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  ABXR87_RS16110 (ABXR87_16110) - 3392065..3392856 (-) 792 WP_000405163.1 RodZ domain-containing protein -
  ABXR87_RS16115 (ABXR87_16115) pilF 3392847..3393647 (-) 801 WP_188137546.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  ABXR87_RS16120 (ABXR87_16120) rlmN 3393663..3394895 (-) 1233 WP_002067279.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  ABXR87_RS16125 (ABXR87_16125) ndk 3395018..3395449 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  ABXR87_RS16130 (ABXR87_16130) iscX 3395563..3395763 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  ABXR87_RS16135 (ABXR87_16135) - 3395863..3396414 (-) 552 WP_000669563.1 phosphatase PAP2 family protein -
  ABXR87_RS16140 (ABXR87_16140) - 3396439..3397737 (-) 1299 WP_086238243.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30064.35 Da        Isoelectric Point: 9.2307

>NTDB_id=1015733 ABXR87_RS16115 WP_188137546.1 3392847..3393647(-) (pilF) [Acinetobacter baumannii strain AB11-AUFP]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKTGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=1015733 ABXR87_RS16115 WP_188137546.1 3392847..3393647(-) (pilF) [Acinetobacter baumannii strain AB11-AUFP]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCCCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCCTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAACGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.624

100

0.996
  pilF Acinetobacter baylyi ADP1

74.615

97.744

0.729

Multiple sequence alignment