Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   DQL62_RS09410 Genome accession   NZ_LS483300
Coordinates   1855735..1856475 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC7485     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1850735..1861475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQL62_RS09385 (NCTC7485_01784) hemH 1851613..1852536 (-) 924 WP_000162887.1 ferrochelatase -
  DQL62_RS09390 (NCTC7485_01785) hemE 1852594..1853631 (-) 1038 WP_000233533.1 uroporphyrinogen decarboxylase -
  DQL62_RS09395 - 1853621..1853707 (-) 87 WP_031875110.1 hypothetical protein -
  DQL62_RS09400 (NCTC7485_01786) traP 1853892..1854395 (+) 504 WP_000737983.1 signal transduction protein TRAP -
  DQL62_RS09405 (NCTC7485_01787) ecsB 1854519..1855742 (-) 1224 WP_001245761.1 ABC transporter permease EcsB -
  DQL62_RS09410 (NCTC7485_01788) pptA 1855735..1856475 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  DQL62_RS09415 (NCTC7485_01789) - 1856609..1857031 (+) 423 WP_000004981.1 HIT family protein -
  DQL62_RS09420 (NCTC7485_01790) - 1857173..1857538 (+) 366 WP_000648120.1 YtxH domain-containing protein -
  DQL62_RS09430 (NCTC7485_01791) - 1858271..1858828 (+) 558 WP_000477965.1 DUF3267 domain-containing protein -
  DQL62_RS09435 (NCTC7485_01792) - 1859033..1859995 (+) 963 WP_000782119.1 foldase protein PrsA -
  DQL62_RS09440 (NCTC7485_01793) yhaM 1860116..1861057 (-) 942 WP_001244176.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=1015690 DQL62_RS09410 WP_000216874.1 1855735..1856475(-) (pptA) [Staphylococcus aureus strain NCTC7485]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=1015690 DQL62_RS09410 WP_000216874.1 1855735..1856475(-) (pptA) [Staphylococcus aureus strain NCTC7485]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTAAATGGTGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCATATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGACTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACCGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545