Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABV523_RS08585 Genome accession   NZ_CP159758
Coordinates   1917333..1917806 (+) Length   157 a.a.
NCBI ID   WP_367428384.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer02     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912333..1922806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV523_RS08565 (ABV523_13900) - 1913594..1913941 (-) 348 WP_267390078.1 hypothetical protein -
  ABV523_RS08570 (ABV523_13895) - 1914106..1915419 (+) 1314 WP_369608983.1 replication-associated recombination protein A -
  ABV523_RS08575 (ABV523_13890) - 1915406..1916476 (+) 1071 WP_367430785.1 aldose epimerase family protein -
  ABV523_RS08580 (ABV523_13885) - 1916629..1917336 (+) 708 WP_100139940.1 phosphoglycolate phosphatase -
  ABV523_RS08585 (ABV523_13880) recX 1917333..1917806 (+) 474 WP_367428384.1 recombination regulator RecX Regulator
  ABV523_RS08590 (ABV523_13875) - 1917941..1918894 (-) 954 WP_369608982.1 bile acid:sodium symporter family protein -
  ABV523_RS08595 (ABV523_13865) rpsT 1918927..1919193 (-) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABV523_RS08600 (ABV523_18315) - 1919323..1920447 (-) 1125 WP_369608981.1 AI-2E family transporter -
  ABV523_RS08605 (ABV523_13840) lpdA 1920700..1922454 (-) 1755 WP_369608980.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 18484.11 Da        Isoelectric Point: 9.2160

>NTDB_id=1015674 ABV523_RS08585 WP_367428384.1 1917333..1917806(+) (recX) [Snodgrassella alvi strain Acer02]
MKPKISLRGRAIAILARQEISRAELTRKLRPHVEENDDIESLLDELAERHWQSDARYAETYINSKSRIHGNLRLQQSLKQ
KGVKAELIADYLPDKAEQISNAVAVLQKKYRRPPSDLKEKHKYMHFLAYRGFSMDIINTAMHRAWEESILPEEEFWE

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1015674 ABV523_RS08585 WP_367428384.1 1917333..1917806(+) (recX) [Snodgrassella alvi strain Acer02]
ATGAAACCAAAAATCAGCTTACGCGGCCGTGCCATTGCTATATTGGCACGGCAAGAAATCAGCCGTGCTGAGCTGACACG
TAAATTACGCCCGCATGTAGAAGAAAACGATGATATTGAATCTTTGCTAGATGAACTAGCCGAGCGGCACTGGCAATCTG
ATGCTCGCTATGCGGAAACCTACATCAACAGTAAAAGCCGTATACACGGCAATCTGCGATTACAGCAAAGCCTTAAACAA
AAAGGAGTTAAAGCGGAGCTGATAGCCGATTATCTGCCAGACAAAGCGGAACAAATCAGTAATGCAGTCGCTGTTTTACA
AAAAAAATATCGCCGGCCTCCATCTGATTTAAAAGAAAAGCACAAATATATGCATTTTCTAGCCTATCGTGGATTTAGCA
TGGATATTATCAATACAGCTATGCATCGTGCTTGGGAAGAGAGTATTCTTCCAGAGGAAGAGTTTTGGGAATAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(31-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

53.378

94.268

0.503

Multiple sequence alignment