Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABV523_RS01775 | Genome accession | NZ_CP159758 |
| Coordinates | 415302..416576 (+) | Length | 424 a.a. |
| NCBI ID | WP_369608688.1 | Uniprot ID | - |
| Organism | Snodgrassella alvi strain Acer02 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 410302..421576
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABV523_RS01745 (ABV523_16435) | - | 410307..411116 (-) | 810 | WP_367420726.1 | class I SAM-dependent methyltransferase | - |
| ABV523_RS01750 (ABV523_08395) | bioH | 411113..411865 (-) | 753 | WP_367427752.1 | pimeloyl-ACP methyl ester esterase BioH | - |
| ABV523_RS01755 (ABV523_08390) | - | 411864..412574 (+) | 711 | WP_369608690.1 | ComF family protein | - |
| ABV523_RS01760 (ABV523_08380) | - | 412935..413648 (+) | 714 | WP_100141055.1 | septal ring lytic transglycosylase RlpA family protein | - |
| ABV523_RS01765 (ABV523_08375) | ruvA | 413727..414305 (+) | 579 | WP_369608689.1 | Holliday junction branch migration protein RuvA | - |
| ABV523_RS01770 (ABV523_08370) | - | 414347..414895 (+) | 549 | WP_100141057.1 | 5'-3'-deoxyribonucleotidase | - |
| ABV523_RS01775 (ABV523_08360) | pilA | 415302..416576 (+) | 1275 | WP_369608688.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABV523_RS01780 (ABV523_08355) | - | 417096..418226 (-) | 1131 | WP_369608687.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| ABV523_RS01785 (ABV523_08345) | - | 418232..419911 (-) | 1680 | WP_369608686.1 | McrB family protein | - |
Sequence
Protein
Download Length: 424 a.a. Molecular weight: 45407.42 Da Isoelectric Point: 4.5714
>NTDB_id=1015662 ABV523_RS01775 WP_369608688.1 415302..416576(+) (pilA) [Snodgrassella alvi strain Acer02]
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHTQPEPAASHQSVEEHTSNAAVSESTATETTEDIIVPAAVDEP
AAIATSTESEVVQAPASENTIVIPVETTETPSETDKPARLGWAARLKQGLSKSRNQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPIDKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GEGIDDLRPFDAKAFVDALIEDEE
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHTQPEPAASHQSVEEHTSNAAVSESTATETTEDIIVPAAVDEP
AAIATSTESEVVQAPASENTIVIPVETTETPSETDKPARLGWAARLKQGLSKSRNQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPIDKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GEGIDDLRPFDAKAFVDALIEDEE
Nucleotide
Download Length: 1275 bp
>NTDB_id=1015662 ABV523_RS01775 WP_369608688.1 415302..416576(+) (pilA) [Snodgrassella alvi strain Acer02]
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCGCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATACCCAGCCTGAACCGGCTGCTTCCCACCAGAGCGTAGAAGAGCACA
CATCGAATGCAGCCGTCTCCGAATCAACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCAGCCGTAGATGAACCG
GCCGCCATTGCCACCAGCACGGAATCAGAAGTTGTTCAGGCTCCGGCCAGCGAAAACACCATAGTGATTCCAGTAGAAAC
CACAGAAACCCCTAGCGAAACAGACAAACCAGCTCGGCTGGGCTGGGCAGCACGGCTCAAACAGGGTCTAAGCAAATCGC
GCAACCAGATGGCCAAATCGCTTGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTACGAAGAGCTGGAAACA
GTATTGCTCACCAGTGATATGGGTATCGAAGCCACCGAAAAACTACTGGCACAGGTACGTCAGCGCGTTACCCTGAAAGG
ATTGAAAAACGGAAACGAACTGCGAAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCTTTGT
CCATACCTATTGATAAAAAACCTTTTGTTATCATGATGGCTGGTGTAAACGGCGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTGCTGGCCGCTGGCGACACCTTCCGTGCAGCTGCCCGTGAGCA
ATTACAGCAATGGGGTGAGCGCAATAACGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCCGCTGTCTGCTTCGATG
CCCTTGAAGCAGCCAAAGCACGTGGTATTGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAGTCATGCTGGTACTCGA
TGCCAACGTCGGCCAGAATGCCATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCCTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCGGTACGTTTCATCGGTGTA
GGCGAAGGCATAGACGATTTACGCCCGTTTGACGCCAAAGCATTTGTAGATGCATTGATTGAGGATGAAGAATAA
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCGCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATACCCAGCCTGAACCGGCTGCTTCCCACCAGAGCGTAGAAGAGCACA
CATCGAATGCAGCCGTCTCCGAATCAACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCAGCCGTAGATGAACCG
GCCGCCATTGCCACCAGCACGGAATCAGAAGTTGTTCAGGCTCCGGCCAGCGAAAACACCATAGTGATTCCAGTAGAAAC
CACAGAAACCCCTAGCGAAACAGACAAACCAGCTCGGCTGGGCTGGGCAGCACGGCTCAAACAGGGTCTAAGCAAATCGC
GCAACCAGATGGCCAAATCGCTTGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTACGAAGAGCTGGAAACA
GTATTGCTCACCAGTGATATGGGTATCGAAGCCACCGAAAAACTACTGGCACAGGTACGTCAGCGCGTTACCCTGAAAGG
ATTGAAAAACGGAAACGAACTGCGAAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCTTTGT
CCATACCTATTGATAAAAAACCTTTTGTTATCATGATGGCTGGTGTAAACGGCGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTGCTGGCCGCTGGCGACACCTTCCGTGCAGCTGCCCGTGAGCA
ATTACAGCAATGGGGTGAGCGCAATAACGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCCGCTGTCTGCTTCGATG
CCCTTGAAGCAGCCAAAGCACGTGGTATTGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAGTCATGCTGGTACTCGA
TGCCAACGTCGGCCAGAATGCCATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCCTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCGGTACGTTTCATCGGTGTA
GGCGAAGGCATAGACGATTTACGCCCGTTTGACGCCAAAGCATTTGTAGATGCATTGATTGAGGATGAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
65.094 |
100 |
0.651 |