Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQM98_RS17830 Genome accession   NZ_LS483297
Coordinates   3438293..3438898 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain NCTC11023     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3433293..3443898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQM98_RS17805 (NCTC11023_03395) aes 3433330..3434289 (+) 960 WP_073528119.1 acetyl esterase -
  DQM98_RS17810 (NCTC11023_03396) hemH 3434286..3435248 (-) 963 WP_001250103.1 ferrochelatase -
  DQM98_RS17815 (NCTC11023_03397) adk 3435484..3436128 (-) 645 WP_001220233.1 adenylate kinase -
  DQM98_RS17825 (NCTC11023_03398) htpG 3436309..3438183 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  DQM98_RS17830 (NCTC11023_03399) recR 3438293..3438898 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  DQM98_RS17835 (NCTC11023_03400) ybaB 3438898..3439227 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DQM98_RS17840 dnaX 3439280..3441211 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  DQM98_RS17845 (NCTC11023_03402) apt 3441340..3441891 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DQM98_RS17855 (NCTC11023_03403) ybaN 3442044..3442421 (-) 378 WP_001188905.1 DUF454 family protein -
  DQM98_RS17860 (NCTC11023_03404) priC 3442491..3443018 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  DQM98_RS17865 (NCTC11023_03405) rsmS 3443032..3443193 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1015501 DQM98_RS17830 WP_001195025.1 3438293..3438898(-) (recR) [Escherichia coli strain NCTC11023]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1015501 DQM98_RS17830 WP_001195025.1 3438293..3438898(-) (recR) [Escherichia coli strain NCTC11023]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443