Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   JMX41_RS19475 Genome accession   NZ_LR898874
Coordinates   3897770..3898375 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MSB1_4I isolate MSB1_4I     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3892770..3903375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX41_RS19455 aes 3892911..3893870 (+) 960 WP_000801814.1 acetyl esterase -
  JMX41_RS19460 hemH 3893867..3894829 (-) 963 WP_001250114.1 ferrochelatase -
  JMX41_RS19465 adk 3894961..3895605 (-) 645 WP_001220233.1 adenylate kinase -
  JMX41_RS19470 htpG 3895786..3897660 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  JMX41_RS19475 recR 3897770..3898375 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  JMX41_RS19480 ybaB 3898375..3898704 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  JMX41_RS19485 dnaX 3898757..3900688 (-) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  JMX41_RS19490 apt 3900817..3901368 (-) 552 WP_001329649.1 adenine phosphoribosyltransferase -
  JMX41_RS19495 ybaN 3901521..3901898 (-) 378 WP_001188905.1 DUF454 family protein -
  JMX41_RS19500 priC 3901968..3902495 (+) 528 WP_000844855.1 primosomal replication protein N'' -
  JMX41_RS19505 rsmS 3902509..3902670 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1015331 JMX41_RS19475 WP_001195025.1 3897770..3898375(-) (recR) [Escherichia coli strain MSB1_4I isolate MSB1_4I]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1015331 JMX41_RS19475 WP_001195025.1 3897770..3898375(-) (recR) [Escherichia coli strain MSB1_4I isolate MSB1_4I]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment