Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   JMX41_RS04065 Genome accession   NZ_LR898874
Coordinates   840748..841953 (-) Length   401 a.a.
NCBI ID   WP_001161835.1    Uniprot ID   -
Organism   Escherichia coli strain MSB1_4I isolate MSB1_4I     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 835748..846953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX41_RS04045 - 835810..837066 (+) 1257 WP_001259305.1 GDSL-type esterase/lipase family protein -
  JMX41_RS04050 neuC 837063..838238 (+) 1176 WP_032142862.1 UDP-N-acetylglucosamine 2-epimerase -
  JMX41_RS04055 - 838231..839379 (+) 1149 WP_000197086.1 DUF6716 putative glycosyltransferase -
  JMX41_RS04060 - 839369..840598 (+) 1230 WP_000575410.1 alpha-2,8-polysialyltransferase family protein -
  JMX41_RS04065 kpsS 840748..841953 (-) 1206 WP_001161835.1 capsular biosynthesis protein Regulator
  JMX41_RS04070 - 841988..844015 (-) 2028 WP_000579517.1 capsular polysaccharide biosynthesis protein -
  JMX41_RS04075 kdsB 844012..844752 (-) 741 WP_000030744.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  JMX41_RS04080 - 844762..846438 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 47858.21 Da        Isoelectric Point: 10.0398

>NTDB_id=1015293 JMX41_RS04065 WP_001161835.1 840748..841953(-) (kpsS) [Escherichia coli strain MSB1_4I isolate MSB1_4I]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLMKTQVNWVYYGGNTTNCQHNI
Y

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=1015293 JMX41_RS04065 WP_001161835.1 840748..841953(-) (kpsS) [Escherichia coli strain MSB1_4I isolate MSB1_4I]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGCCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAACTATTACGCCACGCAAAAGCGGTGGTG
ACGATTAACAGTACGGCGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGATGAAGACGCAGGTTAATTGGGTTTATTATGGGGGGAACACAACAAACTGTCAACATAATATA
TATTAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.007

0.387