Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   JMX26_RS16295 Genome accession   NZ_LR898868
Coordinates   3368894..3369499 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MSB1_1D isolate MSB1_1D     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3363894..3374499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX26_RS16275 aes 3363931..3364890 (+) 960 WP_000801850.1 acetyl esterase -
  JMX26_RS16280 hemH 3364887..3365849 (-) 963 WP_001250088.1 ferrochelatase -
  JMX26_RS16285 adk 3366085..3366729 (-) 645 WP_001220233.1 adenylate kinase -
  JMX26_RS16290 htpG 3366910..3368784 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  JMX26_RS16295 recR 3368894..3369499 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  JMX26_RS16300 ybaB 3369499..3369828 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  JMX26_RS16305 dnaX 3369881..3371812 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  JMX26_RS16310 apt 3371941..3372492 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  JMX26_RS16315 ybaN 3372645..3373022 (-) 378 WP_001188905.1 DUF454 family protein -
  JMX26_RS16320 priC 3373092..3373619 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  JMX26_RS16325 rsmS 3373633..3373794 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1015251 JMX26_RS16295 WP_001195025.1 3368894..3369499(-) (recR) [Escherichia coli strain MSB1_1D isolate MSB1_1D]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1015251 JMX26_RS16295 WP_001195025.1 3368894..3369499(-) (recR) [Escherichia coli strain MSB1_1D isolate MSB1_1D]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443