Detailed information NTG1015218

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMX26_RS04740
• Genome accession: NZ_LR898868
• Coordinates: 976322..977314 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MSB1_1D isolate MSB1_1D
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 971322..982314

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMX26_RS04710	ispD	971383..972093 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JMX26_RS04715	ispF	972093..972572 (+)	480	WP_113418415.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMX26_RS04720	truD	972569..973618 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
JMX26_RS04725	surE	973599..974360 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JMX26_RS04730	pcm	974354..974980 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMX26_RS04735	nlpD	975165..976259 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JMX26_RS04740	rpoS	976322..977314 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMX26_RS04745	ygbN	977408..978772 (-)	1365	WP_000104441.1	GntP family transporter	-
JMX26_RS04750	ygbM	978861..979637 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
JMX26_RS04755	ygbL	979642..980280 (-)	639	WP_001278994.1	aldolase	-
JMX26_RS04760	otnK	980277..981539 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1015218 JMX26_RS04740 WP_000081550.1 976322..977314(+) (rpoS) [Escherichia coli strain MSB1_1D isolate MSB1_1D]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1015218 JMX26_RS04740 WP_000081550.1 976322..977314(+) (rpoS) [Escherichia coli strain MSB1_1D isolate MSB1_1D]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715