Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   JMX72_RS00105 Genome accession   NZ_LR898867
Coordinates   23505..24530 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain MINF_3A isolate MINF_3A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 18505..29530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX72_RS00080 - 18694..19011 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  JMX72_RS00085 trkA 19160..20533 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  JMX72_RS00090 rsmB 20560..21864 (-) 1305 WP_023095007.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JMX72_RS00095 fmt 21861..22805 (-) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  JMX72_RS00100 def 22860..23366 (-) 507 WP_003107059.1 peptide deformylase -
  JMX72_RS00105 tsaP 23505..24530 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JMX72_RS00110 dprA 24665..25753 (+) 1089 WP_015502109.1 DNA-processing protein DprA Machinery gene
  JMX72_RS00115 - 25794..26351 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  JMX72_RS00120 - 26361..27338 (-) 978 WP_033991581.1 quinone oxidoreductase -
  JMX72_RS00125 hemF 27529..28446 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  JMX72_RS00130 aroE 28504..29328 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=1015099 JMX72_RS00105 WP_003097294.1 23505..24530(+) (tsaP) [Pseudomonas aeruginosa strain MINF_3A isolate MINF_3A]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=1015099 JMX72_RS00105 WP_003097294.1 23505..24530(+) (tsaP) [Pseudomonas aeruginosa strain MINF_3A isolate MINF_3A]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAATGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393

Multiple sequence alignment