Detailed information NTG1015038

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMW19_RS06055
• Genome accession: NZ_LR890714
• Coordinates: 1267268..1268260 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MSB1_6C isolate MSB1_6C
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1262268..1273260

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMW19_RS06025	ispD	1262329..1263039 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JMW19_RS06030	ispF	1263039..1263518 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMW19_RS06035	truD	1263515..1264564 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
JMW19_RS06040	surE	1264545..1265306 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JMW19_RS06045	pcm	1265300..1265926 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMW19_RS06050	nlpD	1266111..1267205 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JMW19_RS06055	rpoS	1267268..1268260 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMW19_RS06060	-	1268381..1268788 (-)	408	WP_001208066.1	MarR family transcriptional regulator	-
JMW19_RS06065	-	1268935..1269528 (+)	594	WP_001237173.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
JMW19_RS06070	-	1269528..1270955 (+)	1428	WP_001551547.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
JMW19_RS06075	-	1270966..1271202 (+)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
JMW19_RS06080	ygbN	1271241..1272605 (-)	1365	WP_000104457.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1015038 JMW19_RS06055 WP_000081550.1 1267268..1268260(+) (rpoS) [Escherichia coli strain MSB1_6C isolate MSB1_6C]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1015038 JMW19_RS06055 WP_000081550.1 1267268..1268260(+) (rpoS) [Escherichia coli strain MSB1_6C isolate MSB1_6C]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715