Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABXJ33_RS13130 Genome accession   NZ_CP159629
Coordinates   2689334..2690704 (-) Length   456 a.a.
NCBI ID   WP_002364585.1    Uniprot ID   -
Organism   Enterococcus faecalis strain Z217-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2684334..2695704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ33_RS13110 (ABXJ33_13110) epsC 2685277..2685816 (-) 540 WP_033626852.1 serine O-acetyltransferase EpsC -
  ABXJ33_RS13115 (ABXJ33_13115) gltX 2686086..2687543 (-) 1458 WP_010706819.1 glutamate--tRNA ligase -
  ABXJ33_RS13120 (ABXJ33_13120) ispF 2687596..2688069 (-) 474 WP_033626853.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ABXJ33_RS13125 (ABXJ33_13125) - 2688088..2689233 (-) 1146 WP_002368622.1 PIN/TRAM domain-containing protein -
  ABXJ33_RS13130 (ABXJ33_13130) radA 2689334..2690704 (-) 1371 WP_002364585.1 DNA repair protein RadA Machinery gene
  ABXJ33_RS13135 (ABXJ33_13135) - 2690783..2691268 (-) 486 WP_002361472.1 dUTP diphosphatase -
  ABXJ33_RS13140 (ABXJ33_13140) proB 2691588..2692403 (+) 816 WP_002389550.1 glutamate 5-kinase -
  ABXJ33_RS13145 (ABXJ33_13145) - 2692390..2693643 (+) 1254 WP_002403359.1 glutamate-5-semialdehyde dehydrogenase -
  ABXJ33_RS13150 (ABXJ33_13150) - 2693735..2694682 (-) 948 WP_002385468.1 YafY family protein -
  ABXJ33_RS13155 (ABXJ33_13155) - 2694747..2695214 (+) 468 WP_033626854.1 VOC family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49770.36 Da        Isoelectric Point: 8.0317

>NTDB_id=1015021 ABXJ33_RS13130 WP_002364585.1 2689334..2690704(-) (radA) [Enterococcus faecalis strain Z217-3]
MAKKAKVQFECQSCGYVSPKYLGRCPNCGQWNSMVEEVIQDTSDRRARVSLTGKKTQPQRLSEVIPKKEPRVKTELVELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLAATGGTVLYVSGEESAEQIKLRAERLGTVNETFYLYAETDMHEISR
AIEKLEPDYVIIDSIQTMTQPDVTSVAGSVSQVRETTAELLKLAKTNGIAIFIVGHVTKEGSIAGPRMLEHMVDTVLYFE
GDKHHTFRILRAVKNRFGSTNEIGIFEMQTHGLVEVMNPSQVFLEERLEGATGSSIVVAMEGSRPILVEIQALVTPTMFG
NAKRTTTGLDFNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKINEPAIDLALAISIASSYKEKGTSSSECFIGEIGLTG
EIRRVNSIEQRVREAQKLGFTKVYVPKNNLGGWKAPEGIEIIGVSTIGETLRKVFK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1015021 ABXJ33_RS13130 WP_002364585.1 2689334..2690704(-) (radA) [Enterococcus faecalis strain Z217-3]
ATGGCAAAAAAAGCAAAAGTTCAATTTGAATGTCAAAGCTGTGGGTATGTGTCTCCAAAATATCTCGGCCGCTGTCCTAA
TTGCGGACAATGGAATTCGATGGTGGAAGAGGTTATTCAAGATACTTCTGATCGTCGTGCTAGAGTAAGTTTGACTGGTA
AAAAGACACAACCACAACGGCTATCTGAAGTCATACCTAAAAAAGAGCCTCGTGTAAAAACTGAATTAGTGGAGCTGAAT
CGGGTTTTAGGTGGTGGCGTTGTTCCAGGTTCGTTAGTTTTAATCGGTGGCGATCCCGGAATAGGTAAGTCAACATTGCT
CTTACAAGTATCGCAACAATTAGCAGCCACAGGTGGTACGGTTTTATATGTTTCTGGTGAAGAAAGTGCTGAGCAAATTA
AATTACGAGCGGAGCGTCTAGGCACCGTCAACGAGACATTTTACTTATACGCAGAAACAGATATGCACGAAATATCACGA
GCCATTGAAAAATTAGAACCAGACTATGTCATTATTGACTCGATTCAAACAATGACGCAGCCAGATGTTACCAGCGTTGC
TGGTAGTGTCAGTCAAGTCCGAGAAACAACTGCCGAATTATTGAAACTGGCAAAAACGAATGGGATTGCCATTTTTATTG
TCGGACACGTAACGAAGGAAGGGTCTATCGCAGGGCCACGGATGTTGGAACATATGGTAGACACGGTTCTTTATTTTGAA
GGAGATAAGCATCACACCTTTAGAATCTTACGGGCTGTCAAAAATCGGTTTGGCTCAACGAATGAGATTGGTATTTTTGA
AATGCAGACACATGGATTGGTTGAAGTTATGAATCCTTCTCAGGTCTTTTTAGAAGAACGTTTAGAAGGAGCCACCGGAT
CTTCAATTGTGGTAGCAATGGAAGGTTCACGCCCTATTTTGGTGGAAATCCAAGCGTTAGTTACCCCAACGATGTTTGGC
AATGCCAAGCGAACGACCACCGGGTTGGACTTTAATCGCGTTTCTTTAATCATGGCGGTTTTAGAAAAACGGGCAGGCCT
TTTGTTACAAAACCAGGATGCGTATCTAAAAGCGGCTGGTGGAGTCAAAATTAATGAACCAGCTATTGATTTAGCGTTAG
CAATCAGTATTGCTTCTAGCTATAAAGAAAAAGGAACCTCATCTTCGGAATGTTTCATTGGTGAGATTGGTTTAACTGGT
GAAATCCGCCGCGTGAATAGTATTGAACAACGAGTGCGTGAAGCGCAAAAACTAGGCTTTACAAAAGTCTATGTCCCTAA
AAATAACCTTGGTGGCTGGAAAGCGCCTGAAGGTATTGAAATTATTGGCGTTTCAACAATTGGTGAAACGTTAAGAAAAG
TTTTTAAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

75.385

99.781

0.752
  radA Streptococcus pneumoniae Rx1

75.385

99.781

0.752
  radA Streptococcus pneumoniae D39

75.385

99.781

0.752
  radA Streptococcus pneumoniae R6

75.385

99.781

0.752
  radA Streptococcus pneumoniae TIGR4

75.385

99.781

0.752
  radA Streptococcus mitis SK321

75.385

99.781

0.752
  radA Bacillus subtilis subsp. subtilis str. 168

66.297

98.904

0.656

Multiple sequence alignment