Detailed information NTG1014953

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMW23_RS10355
• Genome accession: NZ_LR890693
• Coordinates: 2055627..2056619 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MSB1_4E isolate MSB1_4E
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2050627..2061619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMW23_RS10335	ygbM	2051265..2052041 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
JMW23_RS10340	ygbN	2052130..2053494 (+)	1365	WP_000104433.1	GntP family transporter	-
JMW23_RS10345	-	2053637..2054680 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
JMW23_RS10350	-	2054905..2055456 (+)	552	WP_001179444.1	flavodoxin family protein	-
JMW23_RS10355	rpoS	2055627..2056619 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMW23_RS10360	nlpD	2056682..2057776 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
JMW23_RS10365	pcm	2057961..2058587 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMW23_RS10370	surE	2058581..2059342 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JMW23_RS10375	truD	2059323..2060372 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
JMW23_RS10380	ispF	2060369..2060848 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMW23_RS10385	ispD	2060848..2061558 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1014953 JMW23_RS10355 WP_000081550.1 2055627..2056619(-) (rpoS) [Escherichia coli strain MSB1_4E isolate MSB1_4E]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1014953 JMW23_RS10355 WP_000081550.1 2055627..2056619(-) (rpoS) [Escherichia coli strain MSB1_4E isolate MSB1_4E]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715