Detailed information NTG1014869

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMW95_RS04945
• Genome accession: NZ_LR890651
• Coordinates: 1028693..1029685 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MINF_2E isolate MINF_2E
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1023693..1034685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMW95_RS04915	ispD	1023754..1024464 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JMW95_RS04920	ispF	1024464..1024943 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMW95_RS04925	truD	1024940..1025989 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
JMW95_RS04930	surE	1025970..1026731 (+)	762	WP_057697505.1	5'/3'-nucleotidase SurE	-
JMW95_RS04935	pcm	1026725..1027351 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMW95_RS04940	nlpD	1027536..1028630 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
JMW95_RS04945	rpoS	1028693..1029685 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMW95_RS04950	-	1029806..1030213 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
JMW95_RS04955	-	1030360..1030953 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
JMW95_RS04960	-	1030953..1032380 (+)	1428	WP_021578698.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
JMW95_RS04965	-	1032391..1032627 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
JMW95_RS04970	ygbN	1032666..1034030 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1014869 JMW95_RS04945 WP_000081550.1 1028693..1029685(+) (rpoS) [Escherichia coli strain MINF_2E isolate MINF_2E]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1014869 JMW95_RS04945 WP_000081550.1 1028693..1029685(+) (rpoS) [Escherichia coli strain MINF_2E isolate MINF_2E]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715