Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABVF11_RS06400 Genome accession   NZ_CP159610
Coordinates   1205841..1207211 (-) Length   456 a.a.
NCBI ID   WP_353989358.1    Uniprot ID   -
Organism   Pediococcus argentinicus strain z30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1200841..1212211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF11_RS06380 (ABVF11_06380) - 1201035..1201448 (-) 414 WP_353989354.1 Mini-ribonuclease 3 -
  ABVF11_RS06385 (ABVF11_06385) cysS 1201441..1202853 (-) 1413 WP_353989355.1 cysteine--tRNA ligase -
  ABVF11_RS06390 (ABVF11_06390) gltX 1203122..1204615 (-) 1494 WP_353989356.1 glutamate--tRNA ligase -
  ABVF11_RS06395 (ABVF11_06395) - 1204687..1205805 (-) 1119 WP_353989357.1 PIN/TRAM domain-containing protein -
  ABVF11_RS06400 (ABVF11_06400) radA 1205841..1207211 (-) 1371 WP_353989358.1 DNA repair protein RadA Machinery gene
  ABVF11_RS06405 (ABVF11_06405) - 1207309..1207845 (-) 537 WP_353989359.1 dUTP diphosphatase -
  ABVF11_RS06410 (ABVF11_06410) - 1207983..1208315 (+) 333 WP_353989360.1 GNAT family N-acetyltransferase -
  ABVF11_RS06415 (ABVF11_06415) rpiA 1208322..1209005 (+) 684 WP_353989361.1 ribose-5-phosphate isomerase RpiA -
  ABVF11_RS06420 (ABVF11_06420) - 1209080..1210444 (+) 1365 WP_353989362.1 C1 family peptidase -
  ABVF11_RS06425 (ABVF11_06425) - 1210513..1211070 (-) 558 WP_353989363.1 hypothetical protein -
  ABVF11_RS06430 (ABVF11_06430) - 1211090..1211764 (-) 675 WP_353989364.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50320.82 Da        Isoelectric Point: 6.8430

>NTDB_id=1014780 ABVF11_RS06400 WP_353989358.1 1205841..1207211(-) (radA) [Pediococcus argentinicus strain z30]
MAKVKTKFVCQECGYVSPRFLGRCPNCGKWNTLVEEREVEPKNERKSRVSFEGEHSKPQLIKNVSMEDSPRVKTQMEEFN
RVLGGGVIPGSLVLIGGDPGIGKSTLLLQISGQLAATKRDVLYVSGEESAAQIKMRADRLKVASENFYLYPETDMTNIRH
SIEELHPDYVIIDSVQTMQEPDIESAVGSVSQIREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMQEGGLKEVSNPSEIFLEERLSDANGSAIVVSMEGTRPILVEIQALITPTVYG
NAQRTASGLDRNRVSLIMAVLEKRANMTLQNQDAYLKAAGGVKLDEPAIDLALAISIVSSFRNVGTLPTDSFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRIFIPKNNLQGWTPPTGIQVIGVATIKEAIQRIFN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1014780 ABVF11_RS06400 WP_353989358.1 1205841..1207211(-) (radA) [Pediococcus argentinicus strain z30]
TTGGCAAAAGTAAAAACAAAATTTGTATGTCAAGAATGTGGCTATGTATCGCCACGTTTCTTAGGTCGTTGTCCTAACTG
TGGCAAATGGAACACGTTAGTCGAAGAACGTGAAGTTGAACCTAAGAACGAACGTAAAAGCAGAGTTAGCTTTGAAGGCG
AACACAGTAAACCACAACTAATTAAAAACGTTAGTATGGAAGATTCTCCCCGTGTAAAAACGCAGATGGAAGAATTTAAC
CGTGTCCTCGGAGGCGGAGTTATTCCAGGTTCTTTAGTATTGATTGGTGGGGATCCTGGTATTGGTAAATCAACTCTGTT
ACTTCAAATTTCCGGTCAACTAGCTGCGACTAAACGGGATGTTTTATATGTTTCTGGTGAAGAAAGTGCTGCTCAAATTA
AAATGCGAGCAGATCGATTAAAAGTGGCAAGTGAGAACTTCTACTTGTATCCAGAAACGGATATGACGAATATTCGTCAC
TCAATTGAAGAACTTCACCCAGACTATGTCATCATTGACTCGGTTCAAACAATGCAAGAACCCGATATTGAATCGGCTGT
TGGTAGTGTTTCTCAAATTCGAGAAATCACTGCAGAGTTAATGCAAATTGCTAAGACTAACAACATTACCATTTTTATCG
TGGGTCATGTGACTAAAGGTGGTGCCATTGCTGGGCCTAAGATTTTGGAACATATGGTGGATACGGTTCTTTATTTTGAA
GGGGATCTTCATCATACTTATAGAATTCTACGGGCGGTTAAAAACCGTTTTGGTTCAACCAATGAACTGGGTATTTTTGA
AATGCAAGAGGGTGGATTAAAGGAAGTTTCTAATCCATCTGAAATCTTCCTAGAAGAACGCTTGAGTGATGCGAATGGCT
CAGCTATCGTAGTTTCAATGGAAGGAACTCGCCCGATTTTAGTTGAGATTCAGGCTTTAATTACGCCAACTGTCTATGGA
AATGCACAACGAACAGCTAGTGGTTTGGATCGGAACCGTGTCTCTTTGATTATGGCAGTTTTAGAAAAACGAGCTAACAT
GACACTTCAAAATCAAGATGCGTACTTAAAAGCAGCTGGTGGAGTCAAACTTGATGAACCTGCAATTGATTTAGCTTTAG
CTATTAGTATTGTTTCTAGTTTTAGAAATGTTGGAACGTTACCAACGGATAGTTTTGTCGGTGAAATTGGTTTGACTGGT
GAAATCAGACGAGTAAATCGAATCGAACAACGAGTTGCTGAAGCGCAGAAGCTCGGCTTCAAACGGATTTTTATTCCTAA
GAATAATTTACAAGGATGGACACCTCCAACAGGGATTCAAGTAATTGGGGTTGCAACAATTAAAGAAGCTATTCAACGAA
TTTTTAATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(71-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.692

99.781

0.675
  radA Streptococcus mitis NCTC 12261

67.692

99.781

0.675
  radA Streptococcus pneumoniae Rx1

67.473

99.781

0.673
  radA Streptococcus pneumoniae D39

67.473

99.781

0.673
  radA Streptococcus pneumoniae R6

67.473

99.781

0.673
  radA Streptococcus pneumoniae TIGR4

67.473

99.781

0.673
  radA Bacillus subtilis subsp. subtilis str. 168

65.342

99.342

0.649

Multiple sequence alignment