Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   JMW66_RS09050 Genome accession   NZ_LR890619
Coordinates   1943218..1943547 (+) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1938218..1948547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW66_RS09035 - 1938833..1939795 (+) 963 WP_016253165.1 SDR family oxidoreductase -
  JMW66_RS09040 - 1939795..1940832 (+) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  JMW66_RS09045 - 1941030..1943027 (+) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  JMW66_RS09050 comEA/comE1 1943218..1943547 (+) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  JMW66_RS09060 - 1943764..1944960 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  JMW66_RS09065 uvrB 1945148..1947160 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=1014773 JMW66_RS09050 WP_023109812.1 1943218..1943547(+) (comEA/comE1) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=1014773 JMW66_RS09050 WP_023109812.1 1943218..1943547(+) (comEA/comE1) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385