Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   JMW66_RS06700 Genome accession   NZ_LR890619
Coordinates   1437548..1438552 (+) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1432548..1443552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW66_RS06670 fghA 1432640..1433491 (+) 852 WP_003113869.1 S-formylglutathione hydrolase -
  JMW66_RS06675 ispF 1433562..1434035 (+) 474 WP_003098560.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JMW66_RS06680 truD 1434032..1435099 (+) 1068 WP_017148389.1 tRNA pseudouridine(13) synthase TruD -
  JMW66_RS06685 surE 1435087..1435836 (+) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  JMW66_RS06690 - 1435869..1436504 (+) 636 WP_003098558.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  JMW66_RS06695 - 1436550..1437443 (+) 894 WP_201522614.1 peptidoglycan DD-metalloendopeptidase family protein -
  JMW66_RS06700 rpoS 1437548..1438552 (+) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  JMW66_RS06705 fdxA 1438979..1439302 (-) 324 WP_003119354.1 ferredoxin FdxA -
  JMW66_RS06710 mutS 1439369..1441936 (-) 2568 WP_201522615.1 DNA mismatch repair protein MutS -
  JMW66_RS06715 - 1442062..1443069 (-) 1008 WP_023085983.1 TolB family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=1014768 JMW66_RS06700 WP_003113871.1 1437548..1438552(+) (rpoS) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=1014768 JMW66_RS06700 WP_003113871.1 1437548..1438552(+) (rpoS) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653