Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABVF02_RS11530 Genome accession   NZ_CP159598
Coordinates   2371149..2372513 (-) Length   454 a.a.
NCBI ID   WP_345804913.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain z15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2366149..2377513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVF02_RS11505 (ABVF02_11505) - 2366646..2367662 (-) 1017 WP_003577828.1 DUF5808 domain-containing protein -
  ABVF02_RS11510 (ABVF02_11510) - 2367669..2368043 (-) 375 WP_353990767.1 GntR family transcriptional regulator -
  ABVF02_RS11515 (ABVF02_11515) - 2368209..2369480 (-) 1272 WP_345804914.1 MucBP domain-containing protein -
  ABVF02_RS11520 (ABVF02_11520) - 2369804..2369899 (+) 96 Protein_2241 MutR family positive transcriptional regulator -
  ABVF02_RS11525 (ABVF02_11525) - 2370012..2371127 (-) 1116 WP_003567252.1 PIN domain-containing protein -
  ABVF02_RS11530 (ABVF02_11530) radA 2371149..2372513 (-) 1365 WP_345804913.1 DNA repair protein RadA Machinery gene
  ABVF02_RS11535 (ABVF02_11535) - 2372530..2373072 (-) 543 WP_003567256.1 dUTP diphosphatase -
  ABVF02_RS11540 (ABVF02_11540) - 2373293..2373583 (+) 291 WP_003567258.1 GNAT family N-acetyltransferase -
  ABVF02_RS11545 (ABVF02_11545) - 2373700..2374077 (-) 378 WP_003567260.1 DUF805 domain-containing protein -
  ABVF02_RS11550 (ABVF02_11550) - 2374322..2375641 (+) 1320 WP_345804912.1 C1 family peptidase -
  ABVF02_RS11555 (ABVF02_11555) - 2375874..2377220 (+) 1347 WP_353990768.1 C1 family peptidase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49108.44 Da        Isoelectric Point: 7.4216

>NTDB_id=1014759 ABVF02_RS11530 WP_345804913.1 2371149..2372513(-) (radA) [Lacticaseibacillus paracasei strain z15]
MAKAKTQYVCQNCGYISATYLGRCPNCGGWNTLVEETVSSSKSVPRQTAAGSKVKPTRMNDVTITKETRVKTGLDELNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLANTGGTVLYVSGEESASQIKMRAGRLGVANSGIYLYPETDMPSIEDVI
NQMQPDYVVIDSVQTMNVPEMNSAVGSVAQIREVTAELMRIAKSKGVTIFIVGHVTKEGAIAGPKILEHMVDTVLYFEGD
MHHTYRILRSVKNRFGSTNEIGIFEMHQDGLQEVANPSEIFLEERLAGATGSAVVVSMEGTRPILVEIQALISPTMYGNA
KRTSSGLDHNRVSLIMAVLEKRANLMLQNQDAYLKATGGVKLDEPAIDLAMAVAIASSYRDKEISPTDCFVGEIGLTGEV
RRVNRIEERVKEAAKLGFKRIFVPRNNLQGWHAPKDIQVIGVTSIAEALHKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1014759 ABVF02_RS11530 WP_345804913.1 2371149..2372513(-) (radA) [Lacticaseibacillus paracasei strain z15]
ATGGCGAAAGCAAAAACACAATATGTTTGCCAAAACTGTGGCTATATTTCAGCCACTTATCTAGGCCGGTGTCCAAATTG
CGGCGGCTGGAACACCTTAGTGGAAGAAACTGTCAGTTCAAGCAAGTCTGTGCCGCGACAAACAGCAGCCGGCAGTAAGG
TAAAGCCGACGCGGATGAACGATGTGACGATCACCAAAGAAACGCGCGTCAAGACTGGCTTAGATGAACTGAACCGGGTG
CTTGGCGGCGGAGTGGTGCCAGGGTCACTGGTGCTGATCGGCGGGGATCCGGGGATTGGTAAATCAACCTTGCTATTACA
AGTGTCAGGGCAGTTGGCTAATACCGGCGGAACCGTTTTGTATGTCTCTGGCGAAGAAAGTGCCAGTCAGATCAAAATGC
GGGCTGGCCGGCTTGGCGTGGCAAATTCGGGGATCTACTTGTATCCCGAAACCGACATGCCGAGTATTGAAGACGTCATC
AACCAAATGCAGCCGGATTACGTTGTGATCGACTCCGTTCAAACTATGAATGTGCCAGAAATGAATTCAGCGGTCGGTTC
TGTGGCACAGATTCGCGAAGTGACGGCAGAACTGATGCGCATTGCCAAGTCCAAAGGCGTGACCATTTTCATCGTTGGCC
ATGTCACTAAGGAAGGGGCGATTGCCGGGCCGAAGATTCTTGAGCATATGGTCGACACGGTGCTCTATTTTGAAGGCGAC
ATGCACCACACGTATCGAATCTTAAGATCCGTCAAAAATCGATTTGGATCGACCAATGAAATCGGCATTTTTGAAATGCA
TCAAGACGGGTTACAGGAAGTCGCCAATCCCTCGGAAATCTTCTTGGAAGAACGCTTGGCGGGGGCAACCGGTTCTGCGG
TGGTTGTTTCGATGGAAGGCACCCGACCAATCTTAGTCGAGATTCAAGCCTTGATCAGTCCAACGATGTATGGCAATGCT
AAACGGACGAGCAGTGGGTTGGATCACAATCGCGTGAGCTTGATCATGGCCGTTCTTGAGAAGCGGGCTAACTTGATGTT
GCAAAATCAGGACGCCTATCTCAAGGCAACAGGCGGTGTGAAACTCGATGAGCCGGCGATTGACCTCGCCATGGCTGTGG
CAATTGCGTCATCTTATCGAGATAAGGAGATTTCACCGACAGATTGTTTTGTCGGTGAAATCGGATTGACGGGGGAAGTG
CGCCGCGTCAATCGGATCGAAGAACGTGTCAAAGAGGCGGCCAAATTGGGTTTCAAACGGATTTTTGTACCCCGTAACAA
CTTGCAAGGCTGGCATGCGCCAAAAGATATTCAAGTCATTGGTGTTACAAGCATTGCCGAAGCGCTGCATAAGGTCTTTA
ATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-219)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

68.212

99.78

0.681
  radA Streptococcus pneumoniae Rx1

68.212

99.78

0.681
  radA Streptococcus pneumoniae D39

68.212

99.78

0.681
  radA Streptococcus pneumoniae R6

68.212

99.78

0.681
  radA Streptococcus pneumoniae TIGR4

68.212

99.78

0.681
  radA Streptococcus mitis SK321

67.991

99.78

0.678
  radA Bacillus subtilis subsp. subtilis str. 168

64.758

100

0.648

Multiple sequence alignment