Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   JMW66_RS02085 Genome accession   NZ_LR890619
Coordinates   448770..449135 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443770..454135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW66_RS02055 pyrR 444392..444904 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  JMW66_RS02060 ruvX 445016..445450 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  JMW66_RS02065 - 445450..446019 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  JMW66_RS02070 - 446068..446961 (-) 894 WP_003162015.1 energy transducer TonB -
  JMW66_RS02075 gshB 447108..448061 (-) 954 WP_003100943.1 glutathione synthase -
  JMW66_RS02080 pilG 448316..448723 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  JMW66_RS02085 pilH 448770..449135 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  JMW66_RS02090 - 449186..449722 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  JMW66_RS02095 pilJ 449807..451855 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  JMW66_RS02100 pilK 451916..452791 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=1014756 JMW66_RS02085 WP_003084587.1 448770..449135(+) (pilH) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1014756 JMW66_RS02085 WP_003084587.1 448770..449135(+) (pilH) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364