Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   JMW66_RS00100 Genome accession   NZ_LR890619
Coordinates   21219..22244 (+) Length   341 a.a.
NCBI ID   WP_023122440.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 16219..27244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMW66_RS00075 - 16407..16724 (-) 318 WP_003120685.1 tetratricopeptide repeat protein -
  JMW66_RS00080 trkA 16873..18246 (-) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  JMW66_RS00085 rsmB 18274..19578 (-) 1305 WP_201522568.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JMW66_RS00090 fmt 19575..20519 (-) 945 WP_023104722.1 methionyl-tRNA formyltransferase -
  JMW66_RS00095 def 20574..21080 (-) 507 WP_003107059.1 peptide deformylase -
  JMW66_RS00100 tsaP 21219..22244 (+) 1026 WP_023122440.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  JMW66_RS00105 dprA 22379..23467 (+) 1089 WP_003118479.1 DNA-processing protein DprA Machinery gene
  JMW66_RS00110 - 23508..24065 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  JMW66_RS00115 - 24075..25051 (-) 977 Protein_22 NADPH:quinone reductase -
  JMW66_RS00120 hemF 25242..26159 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  JMW66_RS00125 aroE 26217..27041 (+) 825 WP_003111201.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37585.02 Da        Isoelectric Point: 9.5379

>NTDB_id=1014749 JMW66_RS00100 WP_023122440.1 21219..22244(+) (tsaP) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWNISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=1014749 JMW66_RS00100 WP_023122440.1 21219..22244(+) (tsaP) [Pseudomonas aeruginosa strain MINF_7A isolate MINF_7A]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGAACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACACTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTATGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.24

100

0.39