Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ABV520_RS06605 Genome accession   NZ_CP159584
Coordinates   1464766..1465239 (+) Length   157 a.a.
NCBI ID   WP_100139939.1    Uniprot ID   -
Organism   Snodgrassella alvi strain Acer03     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1459766..1470239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABV520_RS06585 (ABV520_04645) - 1461027..1461374 (-) 348 WP_267390078.1 hypothetical protein -
  ABV520_RS06590 (ABV520_04650) - 1461539..1462852 (+) 1314 WP_370386412.1 replication-associated recombination protein A -
  ABV520_RS06595 (ABV520_16850) - 1462839..1463909 (+) 1071 WP_370386413.1 aldose epimerase family protein -
  ABV520_RS06600 (ABV520_04670) - 1464062..1464769 (+) 708 WP_100139940.1 phosphoglycolate phosphatase -
  ABV520_RS06605 (ABV520_16855) recX 1464766..1465239 (+) 474 WP_100139939.1 recombination regulator RecX Regulator
  ABV520_RS06610 (ABV520_04685) - 1465373..1466326 (-) 954 WP_370386414.1 bile acid:sodium symporter family protein -
  ABV520_RS06615 (ABV520_04690) rpsT 1466359..1466625 (-) 267 WP_025330392.1 30S ribosomal protein S20 -
  ABV520_RS06620 (ABV520_04695) - 1466755..1467873 (-) 1119 WP_370387135.1 AI-2E family transporter -
  ABV520_RS06625 (ABV520_04700) lpdA 1468131..1469885 (-) 1755 WP_370386415.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 18483.13 Da        Isoelectric Point: 9.5467

>NTDB_id=1014690 ABV520_RS06605 WP_100139939.1 1464766..1465239(+) (recX) [Snodgrassella alvi strain Acer03]
MKPKISLRGRAIAILARQEISRAELTRKLRPHVEENDDIESLLDELAERHWQSDARYAETYINSKSRIHGNLRLQQSLKQ
KGVKAELIADYLPNKAEQISNAVAVLQKKYRRPPSDLKEKHKYMHFLAYRGFSMDIINTAMHRAWEESILPEEEFWE

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1014690 ABV520_RS06605 WP_100139939.1 1464766..1465239(+) (recX) [Snodgrassella alvi strain Acer03]
ATGAAACCAAAAATCAGCTTACGCGGCCGTGCCATTGCTATATTGGCACGGCAAGAAATCAGCCGTGCTGAGCTGACACG
TAAATTACGCCCGCATGTAGAAGAAAACGATGATATTGAATCTTTGCTAGATGAACTAGCCGAGCGGCACTGGCAATCTG
ATGCTCGCTATGCGGAAACCTACATCAACAGTAAAAGCCGTATACACGGCAATCTGCGATTACAGCAAAGCCTTAAACAA
AAAGGAGTTAAAGCGGAGCTGATAGCCGATTATCTGCCAAACAAAGCGGAACAAATCAGTAATGCAGTCGCTGTTTTACA
AAAAAAATATCGCCGGCCTCCATCTGATTTAAAAGAAAAGCACAAATATATGCATTTTCTAGCCTATCGTGGATTTAGCA
TGGATATTATCAATACAGCTATGCATCGTGCTTGGGAAGAGAGTATTCTTCCAGAGGAAGAGTTTTGGGAATAG

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(31-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

52.703

94.268

0.497

Multiple sequence alignment