Detailed information NTG1014688

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: JMW69_RS05300
• Genome accession: NZ_LR890606
• Coordinates: 1098575..1099567 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MINF_8D isolate MINF_8D
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1093575..1104567

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JMW69_RS05270	ispD	1093636..1094346 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
JMW69_RS05275	ispF	1094346..1094825 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
JMW69_RS05280	truD	1094822..1095871 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
JMW69_RS05285	surE	1095852..1096613 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
JMW69_RS05290	pcm	1096607..1097233 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
JMW69_RS05295	nlpD	1097418..1098512 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
JMW69_RS05300	rpoS	1098575..1099567 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
JMW69_RS05305	ygbN	1099661..1101025 (-)	1365	WP_000104459.1	GntP family transporter	-
JMW69_RS05310	ygbM	1101114..1101890 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
JMW69_RS05315	ygbL	1101895..1102533 (-)	639	WP_001278994.1	aldolase	-
JMW69_RS05320	otnK	1102530..1103792 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1014688 JMW69_RS05300 WP_000081550.1 1098575..1099567(+) (rpoS) [Escherichia coli strain MINF_8D isolate MINF_8D]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1014688 JMW69_RS05300 WP_000081550.1 1098575..1099567(+) (rpoS) [Escherichia coli strain MINF_8D isolate MINF_8D]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715