Detailed information NTG1014677

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ABV520_RS00050
• Genome accession: NZ_CP159584
• Coordinates: 9755..11029 (+)
• Length: 424 a.a.
• NCBI ID: WP_367431817.1
• Uniprot ID: -
• Organism: Snodgrassella alvi strain Acer03
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4755..16029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABV520_RS00025 (ABV520_09860)	bioH	5564..6316 (-)	753	WP_367431809.1	pimeloyl-ACP methyl ester esterase BioH	-
ABV520_RS00030 (ABV520_09865)	-	6315..7025 (+)	711	WP_369608690.1	ComF family protein	-
ABV520_RS00035 (ABV520_09870)	-	7386..8099 (+)	714	WP_100141055.1	septal ring lytic transglycosylase RlpA family protein	-
ABV520_RS00040 (ABV520_09875)	ruvA	8178..8756 (+)	579	WP_367431813.1	Holliday junction branch migration protein RuvA	-
ABV520_RS00045 (ABV520_09880)	-	8798..9346 (+)	549	WP_367431815.1	5'-3'-deoxyribonucleotidase	-
ABV520_RS00050 (ABV520_09885)	pilA	9755..11029 (+)	1275	WP_367431817.1	signal recognition particle-docking protein FtsY	Machinery gene
ABV520_RS00055 (ABV520_09890)	-	11552..12679 (-)	1128	WP_367431819.1	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	-
ABV520_RS00060 (ABV520_15305)	-	12684..14363 (-)	1680	WP_370386691.1	McrB family protein	-

Sequence

Protein

• Length: 424 a.a.
• Molecular weight: 45421.49 Da
• Isoelectric Point: 4.5714

>NTDB_id=1014677 ABV520_RS00050 WP_367431817.1 9755..11029(+) (pilA) [Snodgrassella alvi strain Acer03]
MFGFFKRKKNTEPEQEQASVNPAQPESVEQPDTAAETHAQPEPAASHQSVEEHTSNVAVSESTATETTEDIIVPAAVDEP
AAIATSTESEVVQAPASENTIVIPVETTETLGETDKPARLGWAARLKQGLSKSRNQMAKSLASVFGGGKIDEDLYEELET
VLLTSDMGIEATEKLLAQVRQRVTLKGLKNGNELRSALKEALYELLQPLQQPLSIPIDKKPFVIMMAGVNGAGKTTSIGK
LAKYFQSQGKSVLLAAGDTFRAAAREQLQQWGERNNVTVIAQESGDSAAVCFDALEAAKARGIDIVLADTAGRLPTQLHL
MEEIKKVKRVLQKSLPEAPHEVMLVLDANVGQNAINQVVAFDDALGLTGLIVSKLDGTAKGGILAALAAKRPIPVRFIGV
GESIDDLRPFDAKAFVDALIEDEE

Nucleotide

• Length: 1275 bp

>NTDB_id=1014677 ABV520_RS00050 WP_367431817.1 9755..11029(+) (pilA) [Snodgrassella alvi strain Acer03]
ATGTTTGGATTTTTTAAAAGAAAAAAAAATACAGAGCCAGAGCAAGAACAAGCCAGCGTTAACCCCGCGCAGCCGGAATC
AGTAGAGCAACCCGATACAGCGGCTGAAACTCATGCTCAGCCTGAACCGGCTGCTTCCCACCAGAGCGTAGAAGAGCACA
CATCAAATGTAGCCGTCTCCGAATCTACAGCTACCGAAACAACAGAAGACATCATCGTACCGGCAGCCGTAGATGAACCG
GCCGCCATTGCCACCAGCACGGAATCAGAGGTTGTTCAGGCTCCGGCCAGTGAAAACACCATAGTGATTCCAGTAGAAAC
CACAGAAACCCTTGGCGAAACAGACAAACCAGCTCGACTGGGCTGGGCAGCACGGCTCAAACAGGGTCTAAGCAAATCGC
GCAACCAGATGGCCAAATCGCTGGCGTCTGTATTTGGTGGCGGCAAAATCGATGAAGACCTGTACGAAGAGCTGGAAACA
GTATTGCTCACCAGTGATATGGGTATCGAAGCCACCGAAAAACTACTGGCACAGGTACGCCAGCGCGTTACCCTGAAAGG
ATTGAAAAACGGAAACGAACTGCGCAGCGCCCTGAAAGAAGCCTTATATGAATTACTGCAGCCACTTCAGCAGCCTTTGT
CCATACCTATTGATAAAAAACCTTTTGTTATCATGATGGCTGGTGTAAACGGCGCAGGCAAAACCACCAGTATCGGCAAA
CTGGCCAAATATTTTCAAAGTCAGGGTAAAAGCGTCCTGCTGGCCGCTGGCGACACCTTCCGTGCAGCTGCCCGTGAGCA
ATTACAGCAATGGGGTGAGCGCAATAACGTAACCGTAATTGCGCAGGAATCCGGTGATTCTGCCGCTGTCTGCTTCGATG
CCCTTGAAGCAGCCAAAGCACGTGGTATCGATATCGTACTGGCTGATACCGCTGGCCGCTTGCCAACCCAGCTGCATCTG
ATGGAAGAAATCAAAAAAGTAAAACGCGTGTTGCAAAAATCATTACCCGAAGCACCACACGAAGTCATGCTGGTACTCGA
TGCCAACGTCGGCCAGAACGCCATCAATCAAGTAGTCGCTTTCGACGACGCCCTTGGCCTAACCGGCCTGATCGTTTCTA
AACTGGATGGCACCGCAAAAGGCGGTATCCTCGCCGCACTGGCCGCCAAACGCCCGATACCGGTACGTTTCATCGGTGTA
GGCGAAAGCATCGACGATTTACGCCCGTTTGACGCCAAAGCATTTGTAGATGCATTGATTGAGGATGAGGAATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (137-202)

• SRP54-type protein, GTPase domain (SRP54) (221-420)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	64.516	100	0.66