Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   JMX06_RS25135 Genome accession   NZ_LR890536
Coordinates   5193318..5194310 (-) Length   330 a.a.
NCBI ID   WP_022646319.1    Uniprot ID   -
Organism   Escherichia coli strain MSB1_8B isolate MSB1_8B     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5188318..5199310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMX06_RS25125 yieP 5191210..5191902 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  JMX06_RS25130 mdtD 5191925..5193352 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  JMX06_RS25135 cytR 5193318..5194310 (-) 993 WP_022646319.1 ribose operon transcriptional repressor RbsR Regulator
  JMX06_RS25140 rbsK 5194314..5195243 (-) 930 WP_001361791.1 ribokinase -
  JMX06_RS25145 rbsB 5195369..5196259 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  JMX06_RS25150 rbsC 5196284..5197249 (-) 966 WP_022646318.1 ribose ABC transporter permease -
  JMX06_RS25155 rbsA 5197254..5198759 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  JMX06_RS25160 rbsD 5198767..5199186 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36597.88 Da        Isoelectric Point: 5.2098

>NTDB_id=1014582 JMX06_RS25135 WP_022646319.1 5193318..5194310(-) (cytR) [Escherichia coli strain MSB1_8B isolate MSB1_8B]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVDAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=1014582 JMX06_RS25135 WP_022646319.1 5193318..5194310(-) (cytR) [Escherichia coli strain MSB1_8B isolate MSB1_8B]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGATGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361